MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:198.8 nTPM
HPA Brain:129.3 nTPM
GTEx:198.8 nTPM
FANTOM5:207.5 Scaled Tags Per Million
Pig:152.7 nTPM
Mouse:228.6 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.1
2411 Female, age 72, unknown 111.2
1870 Female, age 42, unknown 92.4
2219 Male, age 76, both hemispheres 91.1
1827 Male, age 72, unknown 87.6
2019 Male, age 18, unknown 86.5
2666 Male, age 74, left hemisphere 78.8
1833 Male, age 53, unknown 76.9
1830 Male, age 51, unknown 74.4
2586 Male, age 75, left hemisphere 68.6
2828 Female, age 72, unknown 63.0
Dorsal raphe nucleus
nTPM: 108.2
2298 Female, age 72, unknown 137.9
2047 Male, age 72, unknown 112.2
1828 Male, age 53, unknown 106.8
2750 Male, age 76, both hemispheres 98.0
2016 Female, age 72, unknown 86.1
Inferior colliculus
nTPM: 80.7
2097 Female, age 72, unknown 97.4
1890 Male, age 53, unknown 80.7
1848 Female, age 42, unknown 75.9
2849 Male, age 72, unknown 68.8
Median raphe nucleus
nTPM: 116.7
2220 Male, age 76, midline 116.7
Periaquaductal grey, anterior
nTPM: 96.8
2502 Female, age 75, unknown 105.1
1947 Male, age 18, unknown 100.3
1795 Male, age 51, unknown 84.9
Periaquaductal grey, dorsal
nTPM: 80.9
1840 Male, age 53, unknown 86.7
2850 Male, age 76, both hemispheres 82.4
2464 Female, age 72, unknown 78.9
1831 Male, age 72, unknown 75.6
Periaquaductal grey, lateral
nTPM: 72.6
2272 Male, age 74, both hemispheres 80.9
2053 Male, age 18, unknown 74.3
2140 Male, age 76, both hemispheres 62.7
Pretectal area
nTPM: 90.1
2224 Female, age 72, unknown 107.4
1816 Male, age 51, unknown 104.5
1944 Female, age 72, unknown 102.9
2007 Male, age 72, unknown 99.4
1817 Female, age 42, unknown 96.8
1815 Male, age 53, unknown 92.0
2667 Female, age 75, unknown 89.6
2273 Male, age 74, both hemispheres 88.1
2825 Male, age 18, unknown 84.9
2316 Male, age 76, right hemisphere 63.2
2407 Male, age 75, both hemispheres 62.7
Red nucleus
nTPM: 92.4
1821 Female, age 72, unknown 152.2
1954 Female, age 42, unknown 104.7
2725 Female, age 75, unknown 96.1
1904 Male, age 53, unknown 90.9
1865 Male, age 51, unknown 90.7
2769 Male, age 72, unknown 87.4
2503 Female, age 72, unknown 86.3
2227 Male, age 72, unknown 85.2
2823 Male, age 76, right hemisphere 83.4
2588 Male, age 74, left hemisphere 79.2
2785 Male, age 18, unknown 78.9
2584 Male, age 75, left hemisphere 73.9
Substantia nigra
nTPM: 129.3
2241 Male, age 72, unknown 190.2
1916 Female, age 42, unknown 165.8
1941 Male, age 53, unknown 155.6
1851 Male, age 51, unknown 148.7
2409 Female, age 72, unknown 121.4
2699 Male, age 18, unknown 119.6
1889 Female, age 72, unknown 110.0
2665 Male, age 74, both hemispheres 108.2
2590 Female, age 75, unknown 91.5
2583 Male, age 75, right hemisphere 81.8
Superior colliculus
nTPM: 79.4
2587 Male, age 74, left hemisphere 98.8
2668 Female, age 75, unknown 92.3
2261 Male, age 18, unknown 87.7
2087 Female, age 72, unknown 83.8
1895 Male, age 76, right hemisphere 80.7
1796 Male, age 53, unknown 78.6
1839 Male, age 51, unknown 75.7
1913 Female, age 42, unknown 70.3
2664 Male, age 75, both hemispheres 69.1
1995 Male, age 72, unknown 56.6
Ventral tegmental area
nTPM: 119.2
1915 Female, age 42, unknown 138.4
2410 Female, age 72, unknown 131.9
2218 Male, age 76, both hemispheres 127.6
2223 Female, age 72, unknown 117.5
1942 Male, age 51, unknown 109.7
2021 Male, age 53, unknown 90.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 198.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 198.8
Samples: 139

Max nTPM: 713.5
Min nTPM: 111.8
Std nTPM: 71.5
Median nTPM: 178.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 713.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 413.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 403.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 386.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 385.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 354.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 322.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 296.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 293.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 286.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 285.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 207.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 207.5
FF:10158-103A5 76 years, female 207.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 152.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 152.7
Samples: 4

Max nTPM: 204.9
Min nTPM: 82.8
Sample A Female 176.8
Sample B Female 204.9
Sample C Male 146.3
Sample D Male 82.8
Midbrain
nTPM: 122.3
Samples: 4

Max nTPM: 139.6
Min nTPM: 101.8
Sample A Female 133.1
Sample B Female 114.6
Sample C Male 139.6
Sample D Male 101.8
Periaqueductal gray
nTPM: 100.8
Samples: 3

Max nTPM: 115.3
Min nTPM: 90.3
Sample B Female 96.7
Sample C Male 115.3
Sample D Male 90.3
Superior colliculi
nTPM: 124.6
Samples: 4

Max nTPM: 133.0
Min nTPM: 104.5
Sample A Female 130.3
Sample B Female 130.4
Sample C Male 133.0
Sample D Male 104.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 228.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 228.6
Samples: 4

Max nTPM: 235.5
Min nTPM: 223.0
Sample A Male 235.5
Sample B Male 223.0
Sample C Female 226.2
Sample D Female 229.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
74658076 Antisense, RP_060220_04_D01, Mouse strain C57BL/6J (56 days, male) 6.3
69671630 Antisense, RP_050428_01_H10, Mouse strain C57BL/6J (56 days, male) 3.3

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