BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:31.6 nTPM
HPA Brain:17.9 nTPM
GTEx:31.6 nTPM
Pig:5.3 nTPM
Mouse:5.1 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045213
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.2
1854 Male, age 80, left hemisphere 21.8
2290 Female, age 72, unknown 21.5
1857 Female, age 85, left hemisphere 20.6
2846 Female, age 79, unknown 15.7
2289 Male, age 61, right hemisphere 14.9
1781 Male, age 74, unknown 14.1
2288 Male, age 75, left hemisphere 13.5
2481 Female, age 94, left hemisphere 7.7
Globus pallidus, externus
nTPM: 5.3
2646 Male, age 61, right hemisphere 7.2
2567 Female, age 72, unknown 6.3
2772 Female, age 79, unknown 4.9
2395 Male, age 75, both hemispheres 4.7
1996 Male, age 80, right hemisphere 3.5
Globus pallidus, internus
nTPM: 4.4
2483 Female, age 94, right hemisphere 7.2
2566 Female, age 72, unknown 7.1
1818 Male, age 74, unknown 4.6
2111 Female, age 85, right hemisphere 3.5
2778 Female, age 91, both hemispheres 3.1
2037 Male, age 80, right hemisphere 3.0
2287 Male, age 75, right hemisphere 2.5
Nucleus accumbens
nTPM: 17.9
2824 Male, age 61, right hemisphere 28.9
1856 Female, age 91, right hemisphere 26.2
1783 Male, age 74, unknown 20.0
1806 Female, age 85, left hemisphere 20.0
2732 Male, age 80, right hemisphere 13.6
2286 Male, age 75, left hemisphere 13.3
2698 Female, age 72, unknown 13.1
2391 Female, age 94, left hemisphere 7.9
Nucleus basalis of Meynert
nTPM: 13.7
2393 Male, age 80, right hemisphere 19.3
2484 Female, age 94, left hemisphere 14.8
2821 Male, age 75, both hemispheres 11.7
2569 Male, age 61, both hemispheres 8.9
Nucleus of the diagonal band
nTPM: 16.5
1979 Male, age 74, unknown 20.1
2195 Female, age 85, both hemispheres 18.1
2029 Male, age 61, right hemisphere 16.2
2775 Male, age 80, right hemisphere 14.7
1812 Female, age 91, both hemispheres 13.4
Putamen
nTPM: 17.1
1838 Male, age 80, right hemisphere 27.1
1937 Female, age 91, right hemisphere 22.6
2647 Male, age 75, left hemisphere 16.5
2466 Female, age 79, unknown 15.9
1829 Male, age 74, unknown 14.0
2489 Female, age 72, unknown 13.8
2482 Female, age 94, left hemisphere 9.9
Septal nuclei
nTPM: 15.0
1960 Male, age 74, unknown 18.2
2059 Female, age 85, both hemispheres 17.9
2394 Male, age 61, left hemisphere 15.6
2009 Female, age 91, both hemispheres 13.9
2031 Female, age 72, unknown 13.7
2199 Male, age 80, right hemisphere 13.3
2629 Female, age 94, right hemisphere 12.0
Stria terminalis, bed nucleus
nTPM: 14.3
2201 Male, age 74, unknown 16.5
2486 Female, age 94, both hemispheres 14.0
1974 Female, age 91, both hemispheres 12.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.2
Samples: 246

Max nTPM: 62.5
Min nTPM: 3.0
Std nTPM: 10.2
Median nTPM: 20.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 62.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 58.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 56.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 54.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 47.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 43.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 42.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 41.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 40.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 40.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 39.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.6
Samples: 246

Max nTPM: 79.2
Min nTPM: 1.3
Std nTPM: 14.9
Median nTPM: 31.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 79.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 74.8
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 70.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 69.8
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 67.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 66.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 65.4
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 65.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 64.5
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 61.8
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 59.8
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Brain - Putamen (basal ganglia)
Average nTPM: 20.6
Samples: 205

Max nTPM: 64.1
Min nTPM: 2.6
Std nTPM: 11.2
Median nTPM: 18.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 64.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 51.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 51.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 50.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 45.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 44.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 43.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 42.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 40.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 40.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 40.0
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BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.3
Pig sample Sample description nTPM
Caudate
nTPM: 3.9
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.6
Sample A Female 3.9
Sample B Female 4.8
Sample C Male 4.1
Sample D Male 2.6
Putamen
nTPM: 2.9
Samples: 4

Max nTPM: 4.8
Min nTPM: 1.9
Sample A Female 4.8
Sample B Female 1.9
Sample C Male 2.3
Sample D Male 2.4
Septum
nTPM: 5.3
Samples: 4

Max nTPM: 7.6
Min nTPM: 3.0
Sample A Female 6.4
Sample B Female 4.2
Sample C Male 7.6
Sample D Male 3.0
Ventral pallidum
nTPM: 4.5
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.3
Sample A Female 4.3
Sample B Female 4.4
Sample C Male 6.0
Sample D Male 3.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.7
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.5
Sample A Male 2.6
Sample B Male 2.9
Sample C Female 2.6
Sample D Female 2.5
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.6
Sample A Male 5.9
Sample B Male 4.7
Sample C Female 4.6
Sample D Female 5.1
Ventral forebrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.7
Sample A Male 4.6
Sample B Male 5.6
Sample C Female 4.8
Sample D Female 3.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69443409 Antisense, RP_050414_04_A08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
69443409 Antisense, RP_050414_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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