MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.5 nTPM
HPA Brain:34.9 nTPM
GTEx:42.5 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:61.6 nTPM
Mouse:59.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
1870 Female, age 42, unknown 36.9
1833 Male, age 53, unknown 33.3
1830 Male, age 51, unknown 32.5
1827 Male, age 72, unknown 31.7
2411 Female, age 72, unknown 31.4
2666 Male, age 74, left hemisphere 31.2
2828 Female, age 72, unknown 28.1
2019 Male, age 18, unknown 27.4
2219 Male, age 76, both hemispheres 27.1
2586 Male, age 75, left hemisphere 21.6
Dorsal raphe nucleus
nTPM: 29.7
2750 Male, age 76, both hemispheres 34.8
2016 Female, age 72, unknown 30.4
1828 Male, age 53, unknown 28.6
2047 Male, age 72, unknown 28.5
2298 Female, age 72, unknown 26.0
Inferior colliculus
nTPM: 32.3
2849 Male, age 72, unknown 33.8
1848 Female, age 42, unknown 32.6
1890 Male, age 53, unknown 31.8
2097 Female, age 72, unknown 30.9
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 30.0
1947 Male, age 18, unknown 31.1
2502 Female, age 75, unknown 30.8
1795 Male, age 51, unknown 28.0
Periaquaductal grey, dorsal
nTPM: 31.5
2850 Male, age 76, both hemispheres 36.0
1831 Male, age 72, unknown 30.7
2464 Female, age 72, unknown 30.1
1840 Male, age 53, unknown 29.4
Periaquaductal grey, lateral
nTPM: 31.1
2140 Male, age 76, both hemispheres 33.5
2053 Male, age 18, unknown 32.2
2272 Male, age 74, both hemispheres 27.5
Pretectal area
nTPM: 30.3
2316 Male, age 76, right hemisphere 32.1
2407 Male, age 75, both hemispheres 32.0
2825 Male, age 18, unknown 31.4
1815 Male, age 53, unknown 31.1
1817 Female, age 42, unknown 30.8
2224 Female, age 72, unknown 30.6
2273 Male, age 74, both hemispheres 30.5
2667 Female, age 75, unknown 29.8
1816 Male, age 51, unknown 29.3
2007 Male, age 72, unknown 28.1
1944 Female, age 72, unknown 27.8
Red nucleus
nTPM: 34.9
2503 Female, age 72, unknown 38.5
1904 Male, age 53, unknown 38.0
2725 Female, age 75, unknown 37.5
2823 Male, age 76, right hemisphere 37.4
1821 Female, age 72, unknown 36.6
1865 Male, age 51, unknown 36.6
1954 Female, age 42, unknown 35.3
2227 Male, age 72, unknown 35.0
2769 Male, age 72, unknown 34.3
2785 Male, age 18, unknown 32.6
2588 Male, age 74, left hemisphere 32.1
2584 Male, age 75, left hemisphere 24.4
Substantia nigra
nTPM: 30.1
2409 Female, age 72, unknown 39.3
2665 Male, age 74, both hemispheres 33.4
1889 Female, age 72, unknown 30.9
2699 Male, age 18, unknown 30.8
1851 Male, age 51, unknown 29.6
2583 Male, age 75, right hemisphere 29.5
2590 Female, age 75, unknown 28.2
2241 Male, age 72, unknown 26.6
1916 Female, age 42, unknown 26.4
1941 Male, age 53, unknown 26.4
Superior colliculus
nTPM: 31.6
1913 Female, age 42, unknown 37.4
1995 Male, age 72, unknown 36.2
1839 Male, age 51, unknown 33.0
1895 Male, age 76, right hemisphere 32.2
1796 Male, age 53, unknown 31.7
2261 Male, age 18, unknown 31.4
2587 Male, age 74, left hemisphere 30.4
2668 Female, age 75, unknown 30.3
2087 Female, age 72, unknown 27.5
2664 Male, age 75, both hemispheres 25.6
Ventral tegmental area
nTPM: 30.5
2223 Female, age 72, unknown 34.5
2410 Female, age 72, unknown 32.0
2218 Male, age 76, both hemispheres 30.4
2021 Male, age 53, unknown 30.2
1942 Male, age 51, unknown 28.1
1915 Female, age 42, unknown 27.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.5
Samples: 139

Max nTPM: 73.0
Min nTPM: 16.3
Std nTPM: 10.3
Median nTPM: 40.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 73.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 71.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 70.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 64.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 62.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 61.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 58.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 58.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 58.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 58.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.0
FF:10158-103A5 76 years, female 94.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.3
Samples: 4

Max nTPM: 58.4
Min nTPM: 50.9
Sample A Female 55.3
Sample B Female 52.4
Sample C Male 50.9
Sample D Male 58.4
Midbrain
nTPM: 61.6
Samples: 4

Max nTPM: 79.5
Min nTPM: 54.0
Sample A Female 79.5
Sample B Female 58.5
Sample C Male 54.4
Sample D Male 54.0
Periaqueductal gray
nTPM: 56.0
Samples: 3

Max nTPM: 57.5
Min nTPM: 53.1
Sample B Female 57.3
Sample C Male 57.5
Sample D Male 53.1
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 58.5
Min nTPM: 53.7
Sample A Female 58.5
Sample B Female 53.7
Sample C Male 55.6
Sample D Male 56.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.7
Samples: 4

Max nTPM: 62.6
Min nTPM: 57.7
Sample A Male 62.6
Sample B Male 60.6
Sample C Female 57.7
Sample D Female 57.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71723961 Antisense, RP_050921_01_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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