MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:19.2 nTPM
GTEx:11.1 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:4.7 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.9
2666 Male, age 74, left hemisphere 19.0
1833 Male, age 53, unknown 18.3
1870 Female, age 42, unknown 18.2
2586 Male, age 75, left hemisphere 17.7
1827 Male, age 72, unknown 17.4
2219 Male, age 76, both hemispheres 17.0
2828 Female, age 72, unknown 17.0
2411 Female, age 72, unknown 16.7
1830 Male, age 51, unknown 16.5
2019 Male, age 18, unknown 11.6
Dorsal raphe nucleus
nTPM: 17.1
2016 Female, age 72, unknown 20.0
2298 Female, age 72, unknown 18.7
2047 Male, age 72, unknown 17.6
1828 Male, age 53, unknown 15.3
2750 Male, age 76, both hemispheres 13.9
Inferior colliculus
nTPM: 19.2
2849 Male, age 72, unknown 21.5
1848 Female, age 42, unknown 19.6
2097 Female, age 72, unknown 18.0
1890 Male, age 53, unknown 17.8
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 17.9
1947 Male, age 18, unknown 18.6
2502 Female, age 75, unknown 17.7
1795 Male, age 51, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 16.3
2464 Female, age 72, unknown 19.3
1840 Male, age 53, unknown 17.8
2850 Male, age 76, both hemispheres 15.1
1831 Male, age 72, unknown 12.8
Periaquaductal grey, lateral
nTPM: 18.3
2140 Male, age 76, both hemispheres 20.0
2053 Male, age 18, unknown 17.9
2272 Male, age 74, both hemispheres 17.1
Pretectal area
nTPM: 15.8
2825 Male, age 18, unknown 21.1
2224 Female, age 72, unknown 21.0
2316 Male, age 76, right hemisphere 18.7
2407 Male, age 75, both hemispheres 17.6
2273 Male, age 74, both hemispheres 15.3
2007 Male, age 72, unknown 14.2
1816 Male, age 51, unknown 14.1
2667 Female, age 75, unknown 13.5
1815 Male, age 53, unknown 12.9
1817 Female, age 42, unknown 12.7
1944 Female, age 72, unknown 12.5
Red nucleus
nTPM: 15.4
2584 Male, age 75, left hemisphere 17.7
2769 Male, age 72, unknown 17.5
2588 Male, age 74, left hemisphere 16.8
2227 Male, age 72, unknown 16.3
2785 Male, age 18, unknown 15.4
2823 Male, age 76, right hemisphere 15.4
1954 Female, age 42, unknown 15.3
2725 Female, age 75, unknown 15.0
1904 Male, age 53, unknown 14.4
2503 Female, age 72, unknown 14.4
1865 Male, age 51, unknown 13.6
1821 Female, age 72, unknown 13.5
Substantia nigra
nTPM: 16.0
2241 Male, age 72, unknown 19.5
2409 Female, age 72, unknown 17.8
1916 Female, age 42, unknown 17.0
1941 Male, age 53, unknown 16.3
1851 Male, age 51, unknown 15.7
2590 Female, age 75, unknown 15.6
1889 Female, age 72, unknown 15.1
2699 Male, age 18, unknown 15.0
2583 Male, age 75, right hemisphere 14.0
2665 Male, age 74, both hemispheres 13.9
Superior colliculus
nTPM: 16.2
2668 Female, age 75, unknown 19.3
2664 Male, age 75, both hemispheres 19.0
1895 Male, age 76, right hemisphere 18.0
2261 Male, age 18, unknown 17.6
1796 Male, age 53, unknown 17.1
1839 Male, age 51, unknown 17.0
2087 Female, age 72, unknown 15.5
2587 Male, age 74, left hemisphere 14.4
1995 Male, age 72, unknown 12.2
1913 Female, age 42, unknown 11.7
Ventral tegmental area
nTPM: 15.6
1942 Male, age 51, unknown 19.3
2021 Male, age 53, unknown 17.6
1915 Female, age 42, unknown 16.8
2218 Male, age 76, both hemispheres 15.7
2410 Female, age 72, unknown 12.9
2223 Female, age 72, unknown 11.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 139

Max nTPM: 27.4
Min nTPM: 6.4
Std nTPM: 2.5
Median nTPM: 10.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 27.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 19.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 16.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 15.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 15.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 15.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 14.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 14.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 14.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 14.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.9
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 3.6
Sample C Male 3.9
Sample D Male 5.2
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Female 4.5
Sample B Female 3.9
Sample C Male 3.0
Sample D Male 3.4
Periaqueductal gray
nTPM: 4.1
Samples: 3

Max nTPM: 4.2
Min nTPM: 4.0
Sample B Female 4.2
Sample C Male 4.1
Sample D Male 4.0
Superior colliculi
nTPM: 3.3
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.7
Sample A Female 3.2
Sample B Female 3.8
Sample C Male 2.7
Sample D Male 3.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.4
Sample A Male 4.4
Sample B Male 4.9
Sample C Female 4.4
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69548846 Antisense, RP_050426_02_D07, Mouse strain C57BL/6J (56 days, male) 4.5

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