MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.0 nTPM
HPA Brain:85.1 nTPM
GTEx:40.0 nTPM
FANTOM5:119.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.1
2666 Male, age 74, left hemisphere 117.8
2586 Male, age 75, left hemisphere 113.2
2828 Female, age 72, unknown 107.9
1827 Male, age 72, unknown 82.9
2219 Male, age 76, both hemispheres 82.0
1833 Male, age 53, unknown 76.4
1870 Female, age 42, unknown 74.8
2019 Male, age 18, unknown 69.1
1830 Male, age 51, unknown 66.0
2411 Female, age 72, unknown 61.1
Dorsal raphe nucleus
nTPM: 72.2
1828 Male, age 53, unknown 88.1
2047 Male, age 72, unknown 84.3
2016 Female, age 72, unknown 68.4
2750 Male, age 76, both hemispheres 68.4
2298 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 71.3
2849 Male, age 72, unknown 94.4
1890 Male, age 53, unknown 70.2
1848 Female, age 42, unknown 68.7
2097 Female, age 72, unknown 51.9
Median raphe nucleus
nTPM: 83.7
2220 Male, age 76, midline 83.7
Periaquaductal grey, anterior
nTPM: 72.5
1795 Male, age 51, unknown 86.6
1947 Male, age 18, unknown 66.9
2502 Female, age 75, unknown 64.0
Periaquaductal grey, dorsal
nTPM: 69.6
2850 Male, age 76, both hemispheres 85.6
1831 Male, age 72, unknown 70.7
2464 Female, age 72, unknown 63.4
1840 Male, age 53, unknown 58.7
Periaquaductal grey, lateral
nTPM: 63.1
2140 Male, age 76, both hemispheres 66.0
2053 Male, age 18, unknown 65.7
2272 Male, age 74, both hemispheres 57.6
Pretectal area
nTPM: 81.6
1816 Male, age 51, unknown 105.5
2007 Male, age 72, unknown 103.0
1817 Female, age 42, unknown 100.5
1944 Female, age 72, unknown 99.8
1815 Male, age 53, unknown 92.0
2825 Male, age 18, unknown 80.7
2667 Female, age 75, unknown 75.7
2407 Male, age 75, both hemispheres 69.9
2224 Female, age 72, unknown 66.5
2316 Male, age 76, right hemisphere 56.1
2273 Male, age 74, both hemispheres 47.9
Red nucleus
nTPM: 79.0
2584 Male, age 75, left hemisphere 103.5
2588 Male, age 74, left hemisphere 90.3
2823 Male, age 76, right hemisphere 81.3
2785 Male, age 18, unknown 80.9
2769 Male, age 72, unknown 80.8
2503 Female, age 72, unknown 78.0
1954 Female, age 42, unknown 75.7
2725 Female, age 75, unknown 74.3
2227 Male, age 72, unknown 73.2
1865 Male, age 51, unknown 73.0
1904 Male, age 53, unknown 69.6
1821 Female, age 72, unknown 67.9
Substantia nigra
nTPM: 84.2
2665 Male, age 74, both hemispheres 122.3
1916 Female, age 42, unknown 99.8
2583 Male, age 75, right hemisphere 97.3
2699 Male, age 18, unknown 95.6
1941 Male, age 53, unknown 82.7
1851 Male, age 51, unknown 82.4
1889 Female, age 72, unknown 80.9
2590 Female, age 75, unknown 77.9
2409 Female, age 72, unknown 54.1
2241 Male, age 72, unknown 48.8
Superior colliculus
nTPM: 77.5
2668 Female, age 75, unknown 99.4
2664 Male, age 75, both hemispheres 96.0
1796 Male, age 53, unknown 82.5
2087 Female, age 72, unknown 80.4
2261 Male, age 18, unknown 76.8
2587 Male, age 74, left hemisphere 74.4
1839 Male, age 51, unknown 70.6
1913 Female, age 42, unknown 70.5
1995 Male, age 72, unknown 62.1
1895 Male, age 76, right hemisphere 61.8
Ventral tegmental area
nTPM: 75.0
1915 Female, age 42, unknown 87.1
2218 Male, age 76, both hemispheres 79.4
2223 Female, age 72, unknown 75.9
2410 Female, age 72, unknown 72.2
2021 Male, age 53, unknown 67.7
1942 Male, age 51, unknown 67.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.0
Samples: 139

Max nTPM: 81.6
Min nTPM: 15.6
Std nTPM: 10.8
Median nTPM: 39.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 81.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 64.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 64.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 64.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 62.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 60.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 59.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 58.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 57.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.0
FF:10158-103A5 76 years, female 119.0

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