MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:31.7 nTPM
GTEx:6.4 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:2.1 nTPM
Mouse:8.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
2586 Male, age 75, left hemisphere 36.7
1833 Male, age 53, unknown 32.7
1830 Male, age 51, unknown 30.9
2019 Male, age 18, unknown 28.8
2828 Female, age 72, unknown 28.1
2666 Male, age 74, left hemisphere 28.0
1870 Female, age 42, unknown 26.2
2219 Male, age 76, both hemispheres 25.9
2411 Female, age 72, unknown 24.0
1827 Male, age 72, unknown 21.6
Dorsal raphe nucleus
nTPM: 25.9
2016 Female, age 72, unknown 28.8
2750 Male, age 76, both hemispheres 28.8
2047 Male, age 72, unknown 25.4
1828 Male, age 53, unknown 25.1
2298 Female, age 72, unknown 21.3
Inferior colliculus
nTPM: 23.1
1890 Male, age 53, unknown 26.0
2849 Male, age 72, unknown 23.9
1848 Female, age 42, unknown 23.8
2097 Female, age 72, unknown 18.7
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 27.4
1795 Male, age 51, unknown 29.9
1947 Male, age 18, unknown 27.7
2502 Female, age 75, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 23.4
2850 Male, age 76, both hemispheres 26.9
1831 Male, age 72, unknown 26.3
2464 Female, age 72, unknown 23.6
1840 Male, age 53, unknown 16.9
Periaquaductal grey, lateral
nTPM: 28.7
2140 Male, age 76, both hemispheres 32.2
2053 Male, age 18, unknown 28.4
2272 Male, age 74, both hemispheres 25.6
Pretectal area
nTPM: 25.6
2316 Male, age 76, right hemisphere 38.9
2407 Male, age 75, both hemispheres 30.2
2667 Female, age 75, unknown 29.3
2825 Male, age 18, unknown 25.2
2273 Male, age 74, both hemispheres 25.1
1815 Male, age 53, unknown 23.6
2224 Female, age 72, unknown 23.3
2007 Male, age 72, unknown 23.2
1944 Female, age 72, unknown 21.7
1817 Female, age 42, unknown 21.3
1816 Male, age 51, unknown 19.7
Red nucleus
nTPM: 31.7
2823 Male, age 76, right hemisphere 40.9
2769 Male, age 72, unknown 35.7
1865 Male, age 51, unknown 35.6
2584 Male, age 75, left hemisphere 33.7
2227 Male, age 72, unknown 33.0
1904 Male, age 53, unknown 32.6
2588 Male, age 74, left hemisphere 32.0
2785 Male, age 18, unknown 28.9
2503 Female, age 72, unknown 27.3
2725 Female, age 75, unknown 27.3
1821 Female, age 72, unknown 27.1
1954 Female, age 42, unknown 26.8
Substantia nigra
nTPM: 25.0
2583 Male, age 75, right hemisphere 32.3
2699 Male, age 18, unknown 31.1
2590 Female, age 75, unknown 29.4
2665 Male, age 74, both hemispheres 26.8
1851 Male, age 51, unknown 24.4
1941 Male, age 53, unknown 24.1
1889 Female, age 72, unknown 20.8
2241 Male, age 72, unknown 20.8
1916 Female, age 42, unknown 20.5
2409 Female, age 72, unknown 20.1
Superior colliculus
nTPM: 27.2
2664 Male, age 75, both hemispheres 35.3
1995 Male, age 72, unknown 31.9
1913 Female, age 42, unknown 31.6
1895 Male, age 76, right hemisphere 28.6
1839 Male, age 51, unknown 25.7
1796 Male, age 53, unknown 24.9
2668 Female, age 75, unknown 24.8
2087 Female, age 72, unknown 23.7
2587 Male, age 74, left hemisphere 23.1
2261 Male, age 18, unknown 22.4
Ventral tegmental area
nTPM: 24.7
2021 Male, age 53, unknown 29.4
2223 Female, age 72, unknown 27.3
1942 Male, age 51, unknown 24.2
2218 Male, age 76, both hemispheres 23.1
2410 Female, age 72, unknown 23.0
1915 Female, age 42, unknown 21.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.4
Samples: 139

Max nTPM: 19.3
Min nTPM: 2.0
Std nTPM: 2.3
Median nTPM: 6.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 19.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 16.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 12.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 11.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 10.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 8.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 8.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 8.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.1
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 2.8
Sample C Male 1.6
Sample D Male 2.8
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.4
Sample A Female 1.9
Sample B Female 1.5
Sample C Male 1.4
Sample D Male 1.6
Periaqueductal gray
nTPM: 1.9
Samples: 3

Max nTPM: 2.1
Min nTPM: 1.6
Sample B Female 1.9
Sample C Male 1.6
Sample D Male 2.1
Superior colliculi
nTPM: 1.9
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.4
Sample A Female 1.5
Sample B Female 2.9
Sample C Male 1.4
Sample D Male 1.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.5
Sample A Male 9.6
Sample B Male 8.1
Sample C Female 7.5
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69817085 Antisense, RP_050510_02_F01, Mouse strain C57BL/6J (56 days, male) 0.1

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