MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:346.6 nTPM
HPA Brain:290.1 nTPM
GTEx:346.6 nTPM
FANTOM5:213.7 Scaled Tags Per Million
Pig:632.4 nTPM
Mouse:790.7 nTPM
Allen mouse:10.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 290.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 240.2
1827 Male, age 72, unknown 283.5
2019 Male, age 18, unknown 265.6
2411 Female, age 72, unknown 254.6
1833 Male, age 53, unknown 240.7
2828 Female, age 72, unknown 238.1
2219 Male, age 76, both hemispheres 236.9
1870 Female, age 42, unknown 230.5
2666 Male, age 74, left hemisphere 219.6
1830 Male, age 51, unknown 219.4
2586 Male, age 75, left hemisphere 213.1
Dorsal raphe nucleus
nTPM: 262.7
2298 Female, age 72, unknown 292.2
1828 Male, age 53, unknown 279.6
2047 Male, age 72, unknown 278.6
2750 Male, age 76, both hemispheres 243.2
2016 Female, age 72, unknown 219.9
Inferior colliculus
nTPM: 267.6
2097 Female, age 72, unknown 283.8
1890 Male, age 53, unknown 269.8
1848 Female, age 42, unknown 266.3
2849 Male, age 72, unknown 250.6
Median raphe nucleus
nTPM: 257.8
2220 Male, age 76, midline 257.8
Periaquaductal grey, anterior
nTPM: 259.7
1947 Male, age 18, unknown 288.1
1795 Male, age 51, unknown 263.3
2502 Female, age 75, unknown 227.7
Periaquaductal grey, dorsal
nTPM: 227.4
2850 Male, age 76, both hemispheres 264.3
1840 Male, age 53, unknown 233.6
1831 Male, age 72, unknown 216.8
2464 Female, age 72, unknown 194.7
Periaquaductal grey, lateral
nTPM: 254.0
2272 Male, age 74, both hemispheres 307.1
2053 Male, age 18, unknown 236.6
2140 Male, age 76, both hemispheres 218.4
Pretectal area
nTPM: 290.1
1817 Female, age 42, unknown 352.4
2007 Male, age 72, unknown 343.5
1944 Female, age 72, unknown 336.5
2667 Female, age 75, unknown 319.9
1816 Male, age 51, unknown 318.7
2224 Female, age 72, unknown 294.8
2273 Male, age 74, both hemispheres 287.3
1815 Male, age 53, unknown 286.8
2825 Male, age 18, unknown 232.7
2407 Male, age 75, both hemispheres 219.6
2316 Male, age 76, right hemisphere 198.4
Red nucleus
nTPM: 259.8
1821 Female, age 72, unknown 325.7
2725 Female, age 75, unknown 297.2
1865 Male, age 51, unknown 268.7
1954 Female, age 42, unknown 268.7
2503 Female, age 72, unknown 268.4
2785 Male, age 18, unknown 259.8
2769 Male, age 72, unknown 257.4
2823 Male, age 76, right hemisphere 255.5
2227 Male, age 72, unknown 249.6
1904 Male, age 53, unknown 240.9
2584 Male, age 75, left hemisphere 217.5
2588 Male, age 74, left hemisphere 207.8
Substantia nigra
nTPM: 285.4
1916 Female, age 42, unknown 369.0
1889 Female, age 72, unknown 352.3
1941 Male, age 53, unknown 321.1
1851 Male, age 51, unknown 301.4
2699 Male, age 18, unknown 294.2
2409 Female, age 72, unknown 270.4
2241 Male, age 72, unknown 253.3
2665 Male, age 74, both hemispheres 251.4
2590 Female, age 75, unknown 231.6
2583 Male, age 75, right hemisphere 209.7
Superior colliculus
nTPM: 249.8
2087 Female, age 72, unknown 282.1
1796 Male, age 53, unknown 274.5
1895 Male, age 76, right hemisphere 273.2
2587 Male, age 74, left hemisphere 271.2
2668 Female, age 75, unknown 265.2
2261 Male, age 18, unknown 248.4
1913 Female, age 42, unknown 236.4
1839 Male, age 51, unknown 232.3
1995 Male, age 72, unknown 209.0
2664 Male, age 75, both hemispheres 206.2
Ventral tegmental area
nTPM: 267.0
2218 Male, age 76, both hemispheres 309.3
2410 Female, age 72, unknown 307.0
1915 Female, age 42, unknown 297.4
2223 Female, age 72, unknown 247.7
1942 Male, age 51, unknown 242.4
2021 Male, age 53, unknown 198.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 346.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 346.6
Samples: 139

Max nTPM: 658.4
Min nTPM: 189.2
Std nTPM: 88.7
Median nTPM: 332.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 658.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 640.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 605.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 597.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 568.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 556.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 537.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 508.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 496.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 491.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 482.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.7
FF:10158-103A5 76 years, female 213.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 632.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 495.2
Samples: 4

Max nTPM: 629.1
Min nTPM: 361.8
Sample A Female 629.1
Sample B Female 432.2
Sample C Male 557.6
Sample D Male 361.8
Midbrain
nTPM: 560.7
Samples: 4

Max nTPM: 704.9
Min nTPM: 502.6
Sample A Female 502.6
Sample B Female 523.6
Sample C Male 704.9
Sample D Male 511.6
Periaqueductal gray
nTPM: 443.0
Samples: 3

Max nTPM: 501.2
Min nTPM: 375.9
Sample B Female 452.0
Sample C Male 501.2
Sample D Male 375.9
Superior colliculi
nTPM: 632.4
Samples: 4

Max nTPM: 808.7
Min nTPM: 507.1
Sample A Female 683.4
Sample B Female 507.1
Sample C Male 808.7
Sample D Male 530.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 790.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 790.7
Samples: 4

Max nTPM: 845.0
Min nTPM: 742.6
Sample A Male 845.0
Sample B Male 779.2
Sample C Female 742.6
Sample D Female 796.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
71724561 Antisense, RP_050927_04_H10, Mouse strain C57BL/6J (56 days, male) 10.6

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