MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:389.9 nTPM
HPA Brain:265.5 nTPM
GTEx:389.9 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Pig:165.0 nTPM
Mouse:266.0 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 265.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 193.9
1827 Male, age 72, unknown 242.2
2666 Male, age 74, left hemisphere 209.7
2219 Male, age 76, both hemispheres 199.6
2019 Male, age 18, unknown 198.9
2586 Male, age 75, left hemisphere 189.2
2828 Female, age 72, unknown 186.9
1870 Female, age 42, unknown 185.9
1833 Male, age 53, unknown 183.8
2411 Female, age 72, unknown 183.5
1830 Male, age 51, unknown 160.0
Dorsal raphe nucleus
nTPM: 241.0
2298 Female, age 72, unknown 311.5
1828 Male, age 53, unknown 248.4
2047 Male, age 72, unknown 247.8
2016 Female, age 72, unknown 218.0
2750 Male, age 76, both hemispheres 179.5
Inferior colliculus
nTPM: 215.2
2097 Female, age 72, unknown 222.4
2849 Male, age 72, unknown 218.9
1890 Male, age 53, unknown 215.3
1848 Female, age 42, unknown 204.0
Median raphe nucleus
nTPM: 236.6
2220 Male, age 76, midline 236.6
Periaquaductal grey, anterior
nTPM: 240.2
1947 Male, age 18, unknown 269.3
1795 Male, age 51, unknown 259.5
2502 Female, age 75, unknown 191.7
Periaquaductal grey, dorsal
nTPM: 217.5
2850 Male, age 76, both hemispheres 297.9
1840 Male, age 53, unknown 212.3
1831 Male, age 72, unknown 185.0
2464 Female, age 72, unknown 174.9
Periaquaductal grey, lateral
nTPM: 265.5
2272 Male, age 74, both hemispheres 374.1
2140 Male, age 76, both hemispheres 222.4
2053 Male, age 18, unknown 200.0
Pretectal area
nTPM: 245.3
2273 Male, age 74, both hemispheres 319.9
2007 Male, age 72, unknown 291.9
1816 Male, age 51, unknown 286.8
1817 Female, age 42, unknown 282.4
1944 Female, age 72, unknown 256.8
2667 Female, age 75, unknown 253.5
2224 Female, age 72, unknown 232.9
1815 Male, age 53, unknown 229.5
2825 Male, age 18, unknown 222.0
2316 Male, age 76, right hemisphere 161.9
2407 Male, age 75, both hemispheres 161.1
Red nucleus
nTPM: 199.4
2725 Female, age 75, unknown 255.6
1821 Female, age 72, unknown 253.3
2503 Female, age 72, unknown 216.0
2785 Male, age 18, unknown 205.6
1954 Female, age 42, unknown 201.4
2769 Male, age 72, unknown 200.2
1865 Male, age 51, unknown 195.9
2227 Male, age 72, unknown 190.7
2823 Male, age 76, right hemisphere 181.4
2588 Male, age 74, left hemisphere 170.3
1904 Male, age 53, unknown 169.8
2584 Male, age 75, left hemisphere 152.0
Substantia nigra
nTPM: 216.3
1916 Female, age 42, unknown 310.7
1941 Male, age 53, unknown 266.1
1889 Female, age 72, unknown 250.0
1851 Male, age 51, unknown 225.4
2699 Male, age 18, unknown 218.3
2665 Male, age 74, both hemispheres 213.4
2409 Female, age 72, unknown 183.3
2241 Male, age 72, unknown 175.8
2590 Female, age 75, unknown 170.9
2583 Male, age 75, right hemisphere 149.0
Superior colliculus
nTPM: 201.2
2587 Male, age 74, left hemisphere 227.5
2668 Female, age 75, unknown 223.8
1796 Male, age 53, unknown 223.4
2261 Male, age 18, unknown 219.3
1895 Male, age 76, right hemisphere 210.4
2087 Female, age 72, unknown 209.7
1839 Male, age 51, unknown 184.1
2664 Male, age 75, both hemispheres 173.7
1995 Male, age 72, unknown 173.3
1913 Female, age 42, unknown 167.3
Ventral tegmental area
nTPM: 203.6
1915 Female, age 42, unknown 245.9
2218 Male, age 76, both hemispheres 224.6
2410 Female, age 72, unknown 201.7
1942 Male, age 51, unknown 191.4
2223 Female, age 72, unknown 182.8
2021 Male, age 53, unknown 175.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 389.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 389.9
Samples: 139

Max nTPM: 945.1
Min nTPM: 165.2
Std nTPM: 125.0
Median nTPM: 358.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 945.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 806.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 696.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 677.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 674.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 672.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 633.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 609.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 602.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 599.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 594.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.4
FF:10158-103A5 76 years, female 117.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 165.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.8
Samples: 4

Max nTPM: 174.1
Min nTPM: 81.3
Sample A Female 174.1
Sample B Female 82.2
Sample C Male 101.4
Sample D Male 81.3
Midbrain
nTPM: 144.3
Samples: 4

Max nTPM: 180.9
Min nTPM: 107.6
Sample A Female 175.1
Sample B Female 113.6
Sample C Male 180.9
Sample D Male 107.6
Periaqueductal gray
nTPM: 94.3
Samples: 3

Max nTPM: 104.0
Min nTPM: 80.3
Sample B Female 104.0
Sample C Male 98.6
Sample D Male 80.3
Superior colliculi
nTPM: 165.0
Samples: 4

Max nTPM: 221.6
Min nTPM: 112.4
Sample A Female 221.6
Sample B Female 112.4
Sample C Male 201.2
Sample D Male 124.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.1
Samples: 4

Max nTPM: 285.8
Min nTPM: 243.7
Sample A Male 285.8
Sample B Male 255.6
Sample C Female 243.7
Sample D Female 279.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
69817270 Antisense, RP_050510_03_A05, Mouse strain C57BL/6J (56 days, male) 7.7
76115740 Antisense, RP_060620_02_C08, Mouse strain C57BL/6J (56 days, male) 7.7

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