MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.7 nTPM
HPA Brain:91.8 nTPM
GTEx:91.7 nTPM
FANTOM5:500.3 Scaled Tags Per Million
Pig:103.9 nTPM
Mouse:91.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.8
1870 Female, age 42, unknown 100.3
1830 Male, age 51, unknown 96.7
1833 Male, age 53, unknown 93.7
2019 Male, age 18, unknown 87.8
2411 Female, age 72, unknown 87.8
2828 Female, age 72, unknown 59.1
2219 Male, age 76, both hemispheres 52.0
1827 Male, age 72, unknown 49.4
2666 Male, age 74, left hemisphere 39.7
2586 Male, age 75, left hemisphere 21.6
Dorsal raphe nucleus
nTPM: 53.1
2750 Male, age 76, both hemispheres 97.7
2016 Female, age 72, unknown 60.3
1828 Male, age 53, unknown 46.4
2298 Female, age 72, unknown 35.0
2047 Male, age 72, unknown 26.1
Inferior colliculus
nTPM: 48.4
1848 Female, age 42, unknown 52.1
2097 Female, age 72, unknown 49.7
2849 Male, age 72, unknown 46.1
1890 Male, age 53, unknown 45.6
Median raphe nucleus
nTPM: 45.0
2220 Male, age 76, midline 45.0
Periaquaductal grey, anterior
nTPM: 39.3
1947 Male, age 18, unknown 46.9
2502 Female, age 75, unknown 45.0
1795 Male, age 51, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 34.1
2464 Female, age 72, unknown 50.6
1831 Male, age 72, unknown 35.4
2850 Male, age 76, both hemispheres 30.5
1840 Male, age 53, unknown 19.6
Periaquaductal grey, lateral
nTPM: 42.2
2272 Male, age 74, both hemispheres 55.6
2053 Male, age 18, unknown 39.9
2140 Male, age 76, both hemispheres 31.0
Pretectal area
nTPM: 46.7
2316 Male, age 76, right hemisphere 73.8
1815 Male, age 53, unknown 66.4
2273 Male, age 74, both hemispheres 54.8
1817 Female, age 42, unknown 53.7
2407 Male, age 75, both hemispheres 49.2
2007 Male, age 72, unknown 45.5
2825 Male, age 18, unknown 45.1
2224 Female, age 72, unknown 41.0
1944 Female, age 72, unknown 29.8
2667 Female, age 75, unknown 29.7
1816 Male, age 51, unknown 24.6
Red nucleus
nTPM: 91.8
1865 Male, age 51, unknown 130.3
1821 Female, age 72, unknown 129.5
1904 Male, age 53, unknown 119.4
1954 Female, age 42, unknown 100.8
2823 Male, age 76, right hemisphere 98.0
2227 Male, age 72, unknown 95.5
2769 Male, age 72, unknown 94.9
2785 Male, age 18, unknown 91.4
2503 Female, age 72, unknown 89.8
2725 Female, age 75, unknown 65.2
2588 Male, age 74, left hemisphere 48.1
2584 Male, age 75, left hemisphere 39.0
Substantia nigra
nTPM: 52.1
2590 Female, age 75, unknown 74.8
2409 Female, age 72, unknown 73.4
1889 Female, age 72, unknown 61.7
1851 Male, age 51, unknown 57.5
2241 Male, age 72, unknown 52.8
2583 Male, age 75, right hemisphere 50.7
2699 Male, age 18, unknown 46.4
1941 Male, age 53, unknown 41.5
1916 Female, age 42, unknown 34.3
2665 Male, age 74, both hemispheres 28.3
Superior colliculus
nTPM: 61.3
1913 Female, age 42, unknown 96.0
1995 Male, age 72, unknown 95.0
1895 Male, age 76, right hemisphere 79.5
2587 Male, age 74, left hemisphere 75.4
1839 Male, age 51, unknown 65.0
2668 Female, age 75, unknown 62.9
1796 Male, age 53, unknown 43.7
2087 Female, age 72, unknown 36.1
2261 Male, age 18, unknown 33.4
2664 Male, age 75, both hemispheres 25.6
Ventral tegmental area
nTPM: 53.3
2223 Female, age 72, unknown 70.8
2410 Female, age 72, unknown 66.0
1915 Female, age 42, unknown 46.3
2021 Male, age 53, unknown 46.3
2218 Male, age 76, both hemispheres 46.2
1942 Male, age 51, unknown 44.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.7
Samples: 139

Max nTPM: 296.9
Min nTPM: 17.6
Std nTPM: 57.7
Median nTPM: 73.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 296.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 277.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 273.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 264.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 244.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 232.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 227.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 220.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 202.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 190.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 186.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 500.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 500.3
FF:10158-103A5 76 years, female 500.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 103.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.1
Samples: 4

Max nTPM: 130.1
Min nTPM: 54.0
Sample A Female 117.1
Sample B Female 54.0
Sample C Male 63.0
Sample D Male 130.1
Midbrain
nTPM: 103.9
Samples: 4

Max nTPM: 197.1
Min nTPM: 46.2
Sample A Female 197.1
Sample B Female 116.6
Sample C Male 46.2
Sample D Male 55.8
Periaqueductal gray
nTPM: 66.2
Samples: 3

Max nTPM: 75.8
Min nTPM: 48.9
Sample B Female 75.8
Sample C Male 48.9
Sample D Male 74.0
Superior colliculi
nTPM: 75.3
Samples: 4

Max nTPM: 107.3
Min nTPM: 34.3
Sample A Female 107.3
Sample B Female 34.3
Sample C Male 68.5
Sample D Male 91.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.3
Samples: 4

Max nTPM: 94.9
Min nTPM: 88.1
Sample A Male 92.5
Sample B Male 89.6
Sample C Female 88.1
Sample D Female 94.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68546137 Antisense, RP_050120_02_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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