MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.0 nTPM
HPA Brain:51.3 nTPM
GTEx:51.0 nTPM
FANTOM5:136.4 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:93.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
1827 Male, age 72, unknown 49.6
1870 Female, age 42, unknown 49.4
2411 Female, age 72, unknown 44.3
1833 Male, age 53, unknown 42.5
2828 Female, age 72, unknown 42.4
2019 Male, age 18, unknown 42.3
1830 Male, age 51, unknown 38.7
2219 Male, age 76, both hemispheres 37.3
2666 Male, age 74, left hemisphere 36.3
2586 Male, age 75, left hemisphere 33.9
Dorsal raphe nucleus
nTPM: 44.9
2298 Female, age 72, unknown 53.0
2016 Female, age 72, unknown 43.9
2750 Male, age 76, both hemispheres 43.1
1828 Male, age 53, unknown 42.6
2047 Male, age 72, unknown 41.9
Inferior colliculus
nTPM: 46.9
2097 Female, age 72, unknown 52.2
2849 Male, age 72, unknown 47.8
1848 Female, age 42, unknown 44.1
1890 Male, age 53, unknown 43.6
Median raphe nucleus
nTPM: 51.3
2220 Male, age 76, midline 51.3
Periaquaductal grey, anterior
nTPM: 44.7
1947 Male, age 18, unknown 46.2
2502 Female, age 75, unknown 45.4
1795 Male, age 51, unknown 42.5
Periaquaductal grey, dorsal
nTPM: 47.4
2850 Male, age 76, both hemispheres 54.1
1840 Male, age 53, unknown 48.2
1831 Male, age 72, unknown 43.9
2464 Female, age 72, unknown 43.2
Periaquaductal grey, lateral
nTPM: 48.4
2272 Male, age 74, both hemispheres 52.1
2140 Male, age 76, both hemispheres 48.3
2053 Male, age 18, unknown 44.8
Pretectal area
nTPM: 51.0
1816 Male, age 51, unknown 61.2
2273 Male, age 74, both hemispheres 58.4
1817 Female, age 42, unknown 54.0
1815 Male, age 53, unknown 53.1
2007 Male, age 72, unknown 52.4
1944 Female, age 72, unknown 51.7
2667 Female, age 75, unknown 49.2
2224 Female, age 72, unknown 47.3
2825 Male, age 18, unknown 46.6
2407 Male, age 75, both hemispheres 44.5
2316 Male, age 76, right hemisphere 42.6
Red nucleus
nTPM: 41.8
1821 Female, age 72, unknown 48.7
2725 Female, age 75, unknown 45.1
1954 Female, age 42, unknown 44.3
2823 Male, age 76, right hemisphere 44.1
2785 Male, age 18, unknown 43.1
1865 Male, age 51, unknown 42.4
1904 Male, age 53, unknown 41.9
2503 Female, age 72, unknown 40.1
2227 Male, age 72, unknown 39.3
2769 Male, age 72, unknown 39.0
2584 Male, age 75, left hemisphere 38.1
2588 Male, age 74, left hemisphere 35.0
Substantia nigra
nTPM: 47.6
2241 Male, age 72, unknown 54.5
1916 Female, age 42, unknown 52.4
1941 Male, age 53, unknown 51.0
1889 Female, age 72, unknown 49.1
2409 Female, age 72, unknown 47.6
1851 Male, age 51, unknown 46.5
2699 Male, age 18, unknown 46.1
2590 Female, age 75, unknown 45.2
2665 Male, age 74, both hemispheres 44.9
2583 Male, age 75, right hemisphere 39.0
Superior colliculus
nTPM: 44.8
2261 Male, age 18, unknown 49.3
2087 Female, age 72, unknown 49.2
2587 Male, age 74, left hemisphere 47.8
1796 Male, age 53, unknown 46.9
1895 Male, age 76, right hemisphere 44.8
2668 Female, age 75, unknown 43.8
1839 Male, age 51, unknown 43.2
1913 Female, age 42, unknown 42.9
2664 Male, age 75, both hemispheres 40.1
1995 Male, age 72, unknown 39.9
Ventral tegmental area
nTPM: 44.7
1915 Female, age 42, unknown 48.6
2218 Male, age 76, both hemispheres 46.8
2410 Female, age 72, unknown 44.8
2223 Female, age 72, unknown 44.5
1942 Male, age 51, unknown 43.0
2021 Male, age 53, unknown 40.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.0
Samples: 139

Max nTPM: 77.8
Min nTPM: 36.7
Std nTPM: 6.4
Median nTPM: 50.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 77.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 65.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 64.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 64.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 61.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 61.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 60.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 60.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 59.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.4
FF:10158-103A5 76 years, female 136.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 16.1
Min nTPM: 9.3
Sample A Female 14.8
Sample B Female 11.7
Sample C Male 16.1
Sample D Male 9.3
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 14.9
Min nTPM: 12.2
Sample A Female 13.7
Sample B Female 12.2
Sample C Male 14.9
Sample D Male 14.6
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 15.1
Min nTPM: 12.1
Sample B Female 12.5
Sample C Male 15.1
Sample D Male 12.1
Superior colliculi
nTPM: 13.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.4
Sample A Female 14.1
Sample B Female 12.4
Sample C Male 14.8
Sample D Male 13.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 93.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.3
Samples: 4

Max nTPM: 98.9
Min nTPM: 85.4
Sample A Male 85.4
Sample B Male 95.0
Sample C Female 98.9
Sample D Female 93.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
112649906 Antisense, RP_110421_01_A04, Mouse strain C57BL/6J (56 days, male) 0.5
71724552 Antisense, RP_050927_04_H01, Mouse strain C57BL/6J (56 days, male) 0.3

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