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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
246.1
nTPM
Monaco:
85.1
nTPM
Schmiedel:
58.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
246.1
HPA sample
nTPM
gdT-cell nTPM: 170.5
Samples: 6
Max nTPM: 215.0
Min nTPM: 97.7
P10809_1007
97.7
P10809_1022
184.3
P10809_1041
215.0
P10809_1060
157.9
P10809_1077
166.1
P10809_1098
202.2
MAIT T-cell nTPM: 160.2
Samples: 6
Max nTPM: 201.1
Min nTPM: 88.1
P10809_1006
88.1
P10809_1024
163.6
P10809_1043
191.5
P10809_1062
146.6
P10809_1083
170.3
P10809_1097
201.1
Memory CD4 T-cell nTPM: 166.0
Samples: 6
Max nTPM: 199.5
Min nTPM: 85.2
P10809_1014
85.2
P10809_1026
196.2
P10809_1045
174.2
P10809_1064
199.5
P10809_1086
175.2
P10809_1113
165.6
Memory CD8 T-cell nTPM: 171.8
Samples: 5
Max nTPM: 201.9
Min nTPM: 91.8
P10809_1012
91.8
P10809_1027
169.8
P10809_1046
201.9
P10809_1065
196.6
P10809_1111
199.0
Naive CD4 T-cell nTPM: 131.0
Samples: 6
Max nTPM: 193.4
Min nTPM: 53.8
P10809_1015
53.8
P10809_1030
146.8
P10809_1049
193.4
P10809_1068
110.5
P10809_1085
129.2
P10809_1112
152.0
Naive CD8 T-cell nTPM: 146.5
Samples: 6
Max nTPM: 201.9
Min nTPM: 63.2
P10809_1016
63.2
P10809_1031
147.4
P10809_1050
155.0
P10809_1069
201.9
P10809_1087
151.6
P10809_1110
159.7
T-reg nTPM: 246.1
Samples: 6
Max nTPM: 394.9
Min nTPM: 121.7
P10809_1018
121.7
P10809_1037
241.0
P10809_1056
394.9
P10809_1075
235.0
P10809_1094
253.4
P10809_1106
230.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
85.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 53.8
Samples: 4
Max nTPM: 83.1
Min nTPM: 43.6
RHH5202_R3573
44.8
RHH5230_R3602
43.6
RHH5259_R3631
43.6
RHH5288_R3660
83.1
Effector memory CD8 T-cell nTPM: 57.1
Samples: 4
Max nTPM: 87.1
Min nTPM: 28.3
RHH5203_R3574
62.2
RHH5231_R3603
87.1
RHH5260_R3632
50.7
RHH5289_R3661
28.3
MAIT T-cell nTPM: 66.8
Samples: 4
Max nTPM: 109.7
Min nTPM: 44.9
RHH5233_R3605
50.5
RHH5205_R3576
44.9
RHH5262_R3634
62.1
RHH5297_R3663
109.7
Memory CD4 T-cell TFH nTPM: 70.1
Samples: 4
Max nTPM: 119.5
Min nTPM: 37.3
RHH5300_R3666
74.4
RHH5236_R3608
119.5
RHH5265_R3637
49.3
RHH5208_R3579
37.3
Memory CD4 T-cell Th1 nTPM: 59.8
Samples: 4
Max nTPM: 92.6
Min nTPM: 42.1
RHH5210_R3581
58.6
RHH5302_R3668
92.6
RHH5238_R3610
46.0
RHH5267_R3639
42.1
Memory CD4 T-cell Th1/Th17 nTPM: 52.1
Samples: 4
Max nTPM: 69.0
Min nTPM: 35.2
RHH5303_R3669
56.3
RHH5211_R3582
69.0
RHH5239_R3611
35.2
RHH5268_R3640
47.8
Memory CD4 T-cell Th17 nTPM: 51.6
Samples: 4
Max nTPM: 82.4
Min nTPM: 34.4
RHH5304_R3670
54.1
RHH5212_R3583
82.4
RHH5240_R3612
34.4
RHH5269_R3641
35.3
Memory CD4 T-cell Th2 nTPM: 53.2
Samples: 4
Max nTPM: 58.7
Min nTPM: 41.3
RHH5305_R3671
58.7
RHH5213_R3584
58.2
RHH5241_R3613
54.5
RHH5270_R3642
41.3
Naive CD4 T-cell nTPM: 43.8
Samples: 4
Max nTPM: 66.9
Min nTPM: 30.5
RHH5306_R3672
44.7
RHH5214_R3585
66.9
RHH5242_R3614
30.5
RHH5271_R3643
33.2
Naive CD8 T-cell nTPM: 38.8
Samples: 4
Max nTPM: 60.4
Min nTPM: 15.5
RHH5201_R3572
15.5
RHH5229_R3601
22.3
RHH5258_R3630
56.8
RHH5287_R3659
60.4
Non-Vd2 gdTCR nTPM: 59.9
Samples: 4
Max nTPM: 104.6
Min nTPM: 25.3
RHH5235_R3607
25.3
RHH5264_R3636
62.9
RHH5207_R3578
46.7
RHH5299_R3665
104.6
T-reg nTPM: 68.4
Samples: 4
Max nTPM: 94.1
Min nTPM: 33.1
RHH5301_R3667
90.5
RHH5237_R3609
94.1
RHH5266_R3638
33.1
RHH5209_R3580
55.8
Terminal effector memory CD4 T-cell nTPM: 54.4
Samples: 2
Max nTPM: 68.9
Min nTPM: 39.8
RHH5243_R3615
39.8
RHH5272_R3644
68.9
Terminal effector memory CD8 T-cell nTPM: 79.9
Samples: 4
Max nTPM: 123.9
Min nTPM: 55.6
RHH5232_R3604
74.3
RHH5204_R3575
123.9
RHH5261_R3633
65.7
RHH5296_R3662
55.6
Vd2 gdTCR nTPM: 85.1
Samples: 4
Max nTPM: 124.3
Min nTPM: 51.0
RHH5234_R3606
65.5
RHH5206_R3577
124.3
RHH5263_R3635
51.0
RHH5298_R3664
99.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
