MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA Brain:22.0 nTPM
GTEx:44.2 nTPM
FANTOM5:53.0 Scaled Tags Per Million
Pig:70.0 nTPM
Mouse:42.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
2586 Male, age 75, left hemisphere 25.4
2019 Male, age 18, unknown 23.7
1827 Male, age 72, unknown 22.3
1870 Female, age 42, unknown 20.6
2828 Female, age 72, unknown 20.3
2411 Female, age 72, unknown 18.5
1830 Male, age 51, unknown 18.4
1833 Male, age 53, unknown 16.5
2666 Male, age 74, left hemisphere 15.6
2219 Male, age 76, both hemispheres 15.5
Dorsal raphe nucleus
nTPM: 20.6
2298 Female, age 72, unknown 27.6
1828 Male, age 53, unknown 19.6
2047 Male, age 72, unknown 18.9
2016 Female, age 72, unknown 18.6
2750 Male, age 76, both hemispheres 18.3
Inferior colliculus
nTPM: 19.1
2097 Female, age 72, unknown 23.4
1890 Male, age 53, unknown 19.0
1848 Female, age 42, unknown 17.6
2849 Male, age 72, unknown 16.5
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Periaquaductal grey, anterior
nTPM: 20.6
2502 Female, age 75, unknown 21.1
1795 Male, age 51, unknown 20.8
1947 Male, age 18, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 18.0
2850 Male, age 76, both hemispheres 21.6
2464 Female, age 72, unknown 18.2
1831 Male, age 72, unknown 17.0
1840 Male, age 53, unknown 15.5
Periaquaductal grey, lateral
nTPM: 18.3
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 16.4
2140 Male, age 76, both hemispheres 16.3
Pretectal area
nTPM: 21.5
1817 Female, age 42, unknown 27.6
1816 Male, age 51, unknown 27.5
2007 Male, age 72, unknown 25.6
2273 Male, age 74, both hemispheres 23.7
1815 Male, age 53, unknown 23.4
1944 Female, age 72, unknown 22.9
2224 Female, age 72, unknown 22.8
2667 Female, age 75, unknown 20.2
2825 Male, age 18, unknown 16.1
2407 Male, age 75, both hemispheres 14.6
2316 Male, age 76, right hemisphere 11.7
Red nucleus
nTPM: 20.9
1821 Female, age 72, unknown 27.0
1904 Male, age 53, unknown 25.3
2785 Male, age 18, unknown 24.5
2503 Female, age 72, unknown 22.2
1954 Female, age 42, unknown 20.9
2769 Male, age 72, unknown 20.8
2725 Female, age 75, unknown 20.6
1865 Male, age 51, unknown 19.7
2227 Male, age 72, unknown 19.6
2823 Male, age 76, right hemisphere 19.0
2584 Male, age 75, left hemisphere 18.9
2588 Male, age 74, left hemisphere 12.6
Substantia nigra
nTPM: 21.9
1916 Female, age 42, unknown 27.1
1851 Male, age 51, unknown 26.3
1889 Female, age 72, unknown 23.7
2665 Male, age 74, both hemispheres 22.0
2583 Male, age 75, right hemisphere 21.9
1941 Male, age 53, unknown 21.2
2699 Male, age 18, unknown 21.0
2241 Male, age 72, unknown 20.1
2590 Female, age 75, unknown 18.9
2409 Female, age 72, unknown 17.1
Superior colliculus
nTPM: 20.7
1913 Female, age 42, unknown 24.3
1796 Male, age 53, unknown 23.7
2668 Female, age 75, unknown 23.7
2587 Male, age 74, left hemisphere 23.3
2261 Male, age 18, unknown 21.6
1995 Male, age 72, unknown 21.5
1895 Male, age 76, right hemisphere 18.3
2087 Female, age 72, unknown 17.9
1839 Male, age 51, unknown 16.6
2664 Male, age 75, both hemispheres 16.5
Ventral tegmental area
nTPM: 22.0
2410 Female, age 72, unknown 25.3
2223 Female, age 72, unknown 23.9
1915 Female, age 42, unknown 22.5
2218 Male, age 76, both hemispheres 22.1
2021 Male, age 53, unknown 20.0
1942 Male, age 51, unknown 18.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 139

Max nTPM: 68.2
Min nTPM: 18.3
Std nTPM: 9.3
Median nTPM: 43.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 68.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 65.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 64.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 63.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 62.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 61.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 59.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 57.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.0
FF:10158-103A5 76 years, female 53.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.1
Samples: 4

Max nTPM: 79.7
Min nTPM: 38.0
Sample A Female 79.7
Sample B Female 46.2
Sample C Male 52.4
Sample D Male 38.0
Midbrain
nTPM: 63.6
Samples: 4

Max nTPM: 69.7
Min nTPM: 57.0
Sample A Female 67.5
Sample B Female 57.0
Sample C Male 69.7
Sample D Male 60.2
Periaqueductal gray
nTPM: 46.2
Samples: 3

Max nTPM: 52.1
Min nTPM: 38.3
Sample B Female 48.2
Sample C Male 52.1
Sample D Male 38.3
Superior colliculi
nTPM: 70.0
Samples: 4

Max nTPM: 84.7
Min nTPM: 56.0
Sample A Female 84.7
Sample B Female 64.2
Sample C Male 75.0
Sample D Male 56.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 43.7
Min nTPM: 40.4
Sample A Male 43.7
Sample B Male 42.2
Sample C Female 40.4
Sample D Female 43.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68410518 Antisense, RP_041214_02_A10, Mouse strain C57BL/6J (56 days, male) 0.6

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