MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.0 nTPM
HPA Brain:78.5 nTPM
GTEx:108.0 nTPM
FANTOM5:48.7 Scaled Tags Per Million
Pig:71.8 nTPM
Mouse:88.5 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.4
2019 Male, age 18, unknown 85.6
2411 Female, age 72, unknown 80.9
2586 Male, age 75, left hemisphere 74.4
2828 Female, age 72, unknown 67.7
1827 Male, age 72, unknown 62.1
1870 Female, age 42, unknown 61.1
1833 Male, age 53, unknown 57.8
1830 Male, age 51, unknown 56.4
2219 Male, age 76, both hemispheres 54.7
2666 Male, age 74, left hemisphere 53.2
Dorsal raphe nucleus
nTPM: 78.5
2298 Female, age 72, unknown 92.8
2047 Male, age 72, unknown 80.7
2750 Male, age 76, both hemispheres 78.2
1828 Male, age 53, unknown 75.1
2016 Female, age 72, unknown 65.8
Inferior colliculus
nTPM: 58.7
2097 Female, age 72, unknown 72.9
1890 Male, age 53, unknown 63.5
1848 Female, age 42, unknown 54.3
2849 Male, age 72, unknown 44.0
Median raphe nucleus
nTPM: 68.4
2220 Male, age 76, midline 68.4
Periaquaductal grey, anterior
nTPM: 61.0
1795 Male, age 51, unknown 66.6
2502 Female, age 75, unknown 60.7
1947 Male, age 18, unknown 55.7
Periaquaductal grey, dorsal
nTPM: 54.0
2464 Female, age 72, unknown 61.0
1840 Male, age 53, unknown 56.0
1831 Male, age 72, unknown 52.5
2850 Male, age 76, both hemispheres 46.5
Periaquaductal grey, lateral
nTPM: 54.8
2272 Male, age 74, both hemispheres 63.5
2053 Male, age 18, unknown 53.5
2140 Male, age 76, both hemispheres 47.4
Pretectal area
nTPM: 68.2
1817 Female, age 42, unknown 87.5
2007 Male, age 72, unknown 83.8
2667 Female, age 75, unknown 75.0
1816 Male, age 51, unknown 74.1
1944 Female, age 72, unknown 70.1
2273 Male, age 74, both hemispheres 70.1
1815 Male, age 53, unknown 68.2
2224 Female, age 72, unknown 63.3
2825 Male, age 18, unknown 54.6
2316 Male, age 76, right hemisphere 53.3
2407 Male, age 75, both hemispheres 50.3
Red nucleus
nTPM: 68.2
1821 Female, age 72, unknown 81.1
2503 Female, age 72, unknown 74.4
1904 Male, age 53, unknown 73.0
2785 Male, age 18, unknown 71.4
2725 Female, age 75, unknown 69.4
2769 Male, age 72, unknown 69.0
2227 Male, age 72, unknown 68.4
1954 Female, age 42, unknown 67.3
1865 Male, age 51, unknown 63.8
2823 Male, age 76, right hemisphere 62.6
2588 Male, age 74, left hemisphere 62.3
2584 Male, age 75, left hemisphere 56.0
Substantia nigra
nTPM: 73.8
1916 Female, age 42, unknown 91.7
1851 Male, age 51, unknown 86.0
2409 Female, age 72, unknown 81.5
1889 Female, age 72, unknown 79.2
2241 Male, age 72, unknown 78.7
1941 Male, age 53, unknown 70.2
2699 Male, age 18, unknown 66.8
2590 Female, age 75, unknown 63.1
2583 Male, age 75, right hemisphere 62.7
2665 Male, age 74, both hemispheres 58.3
Superior colliculus
nTPM: 61.0
2087 Female, age 72, unknown 72.4
2261 Male, age 18, unknown 65.2
1796 Male, age 53, unknown 64.6
2587 Male, age 74, left hemisphere 62.9
2668 Female, age 75, unknown 61.8
1995 Male, age 72, unknown 59.7
1913 Female, age 42, unknown 59.4
2664 Male, age 75, both hemispheres 57.6
1839 Male, age 51, unknown 54.4
1895 Male, age 76, right hemisphere 51.9
Ventral tegmental area
nTPM: 70.9
2410 Female, age 72, unknown 84.0
1915 Female, age 42, unknown 76.6
2223 Female, age 72, unknown 70.4
1942 Male, age 51, unknown 67.5
2021 Male, age 53, unknown 64.0
2218 Male, age 76, both hemispheres 63.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.0
Samples: 139

Max nTPM: 363.2
Min nTPM: 50.3
Std nTPM: 37.1
Median nTPM: 98.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 363.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 273.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 224.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 201.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 179.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 176.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 173.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 160.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 159.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 149.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 149.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.7
FF:10158-103A5 76 years, female 48.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.6
Samples: 4

Max nTPM: 93.7
Min nTPM: 56.7
Sample A Female 93.7
Sample B Female 59.0
Sample C Male 56.7
Sample D Male 57.1
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 93.4
Min nTPM: 53.9
Sample A Female 93.4
Sample B Female 69.2
Sample C Male 70.8
Sample D Male 53.9
Periaqueductal gray
nTPM: 58.3
Samples: 3

Max nTPM: 62.1
Min nTPM: 51.2
Sample B Female 61.7
Sample C Male 62.1
Sample D Male 51.2
Superior colliculi
nTPM: 71.2
Samples: 4

Max nTPM: 91.9
Min nTPM: 59.6
Sample A Female 91.9
Sample B Female 68.3
Sample C Male 65.1
Sample D Male 59.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.5
Samples: 4

Max nTPM: 99.9
Min nTPM: 82.3
Sample A Male 99.9
Sample B Male 82.6
Sample C Female 82.3
Sample D Female 89.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69671869 Antisense, RP_050428_02_E06, Mouse strain C57BL/6J (56 days, male) 1.6

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