MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.8 nTPM
HPA Brain:8.7 nTPM
GTEx:1.8 nTPM
FANTOM5:10.2 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.5
2219 Male, age 76, both hemispheres 10.6
2586 Male, age 75, left hemisphere 8.8
2019 Male, age 18, unknown 8.7
1833 Male, age 53, unknown 8.6
2828 Female, age 72, unknown 8.5
1827 Male, age 72, unknown 8.1
2666 Male, age 74, left hemisphere 8.1
1830 Male, age 51, unknown 7.9
2411 Female, age 72, unknown 7.9
1870 Female, age 42, unknown 7.6
Dorsal raphe nucleus
nTPM: 7.7
2750 Male, age 76, both hemispheres 9.1
2298 Female, age 72, unknown 7.6
2047 Male, age 72, unknown 7.4
1828 Male, age 53, unknown 7.3
2016 Female, age 72, unknown 7.0
Inferior colliculus
nTPM: 8.3
2849 Male, age 72, unknown 8.5
1848 Female, age 42, unknown 8.4
2097 Female, age 72, unknown 8.4
1890 Male, age 53, unknown 7.7
Median raphe nucleus
nTPM: 7.5
2220 Male, age 76, midline 7.5
Periaquaductal grey, anterior
nTPM: 8.1
2502 Female, age 75, unknown 9.5
1947 Male, age 18, unknown 7.6
1795 Male, age 51, unknown 7.2
Periaquaductal grey, dorsal
nTPM: 7.7
1831 Male, age 72, unknown 8.5
1840 Male, age 53, unknown 7.9
2464 Female, age 72, unknown 7.9
2850 Male, age 76, both hemispheres 6.3
Periaquaductal grey, lateral
nTPM: 7.3
2272 Male, age 74, both hemispheres 7.9
2053 Male, age 18, unknown 7.2
2140 Male, age 76, both hemispheres 6.7
Pretectal area
nTPM: 8.3
2316 Male, age 76, right hemisphere 10.3
2667 Female, age 75, unknown 9.8
2407 Male, age 75, both hemispheres 9.2
2007 Male, age 72, unknown 8.5
1816 Male, age 51, unknown 8.0
1815 Male, age 53, unknown 7.9
2224 Female, age 72, unknown 7.8
1817 Female, age 42, unknown 7.7
2273 Male, age 74, both hemispheres 7.7
1944 Female, age 72, unknown 7.0
2825 Male, age 18, unknown 7.0
Red nucleus
nTPM: 8.7
1865 Male, age 51, unknown 10.2
2785 Male, age 18, unknown 10.0
2503 Female, age 72, unknown 9.7
1954 Female, age 42, unknown 9.3
2588 Male, age 74, left hemisphere 9.3
2584 Male, age 75, left hemisphere 8.5
2769 Male, age 72, unknown 8.5
2823 Male, age 76, right hemisphere 8.5
2227 Male, age 72, unknown 8.4
1904 Male, age 53, unknown 8.2
1821 Female, age 72, unknown 7.8
2725 Female, age 75, unknown 6.1
Substantia nigra
nTPM: 6.5
1889 Female, age 72, unknown 7.7
2590 Female, age 75, unknown 7.7
2583 Male, age 75, right hemisphere 7.2
1941 Male, age 53, unknown 6.7
2665 Male, age 74, both hemispheres 6.7
2699 Male, age 18, unknown 6.5
1916 Female, age 42, unknown 6.4
1851 Male, age 51, unknown 6.3
2241 Male, age 72, unknown 5.1
2409 Female, age 72, unknown 4.7
Superior colliculus
nTPM: 8.2
1995 Male, age 72, unknown 9.6
1895 Male, age 76, right hemisphere 8.8
1796 Male, age 53, unknown 8.7
2261 Male, age 18, unknown 8.6
2087 Female, age 72, unknown 8.3
2664 Male, age 75, both hemispheres 8.2
1839 Male, age 51, unknown 8.0
1913 Female, age 42, unknown 7.7
2587 Male, age 74, left hemisphere 7.3
2668 Female, age 75, unknown 6.8
Ventral tegmental area
nTPM: 7.6
1942 Male, age 51, unknown 8.2
2223 Female, age 72, unknown 8.1
2021 Male, age 53, unknown 8.0
2218 Male, age 76, both hemispheres 7.2
2410 Female, age 72, unknown 7.2
1915 Female, age 42, unknown 7.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.8
Samples: 139

Max nTPM: 5.6
Min nTPM: 0.7
Std nTPM: 0.6
Median nTPM: 1.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 3.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 3.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 3.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 3.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 2.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 2.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

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