MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:33.8 nTPM
GTEx:43.8 nTPM
FANTOM5:132.4 Scaled Tags Per Million
Pig:106.6 nTPM
Mouse:105.9 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
1870 Female, age 42, unknown 36.1
2411 Female, age 72, unknown 34.6
1830 Male, age 51, unknown 33.8
1833 Male, age 53, unknown 32.5
2019 Male, age 18, unknown 25.9
2828 Female, age 72, unknown 25.0
2219 Male, age 76, both hemispheres 24.6
2666 Male, age 74, left hemisphere 20.9
1827 Male, age 72, unknown 20.4
2586 Male, age 75, left hemisphere 14.1
Dorsal raphe nucleus
nTPM: 21.9
2750 Male, age 76, both hemispheres 37.5
2016 Female, age 72, unknown 21.2
1828 Male, age 53, unknown 19.1
2047 Male, age 72, unknown 17.3
2298 Female, age 72, unknown 14.3
Inferior colliculus
nTPM: 21.6
1848 Female, age 42, unknown 23.0
2849 Male, age 72, unknown 22.8
1890 Male, age 53, unknown 20.8
2097 Female, age 72, unknown 19.9
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Periaquaductal grey, anterior
nTPM: 16.9
1947 Male, age 18, unknown 21.1
2502 Female, age 75, unknown 16.1
1795 Male, age 51, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 15.8
2464 Female, age 72, unknown 20.8
1831 Male, age 72, unknown 15.5
2850 Male, age 76, both hemispheres 14.0
1840 Male, age 53, unknown 13.1
Periaquaductal grey, lateral
nTPM: 16.3
2053 Male, age 18, unknown 18.1
2272 Male, age 74, both hemispheres 17.9
2140 Male, age 76, both hemispheres 13.0
Pretectal area
nTPM: 18.0
2316 Male, age 76, right hemisphere 23.9
1815 Male, age 53, unknown 22.1
2825 Male, age 18, unknown 21.6
2407 Male, age 75, both hemispheres 21.0
1817 Female, age 42, unknown 19.0
2273 Male, age 74, both hemispheres 18.9
2224 Female, age 72, unknown 17.7
2007 Male, age 72, unknown 16.0
2667 Female, age 75, unknown 15.6
1816 Male, age 51, unknown 11.0
1944 Female, age 72, unknown 10.7
Red nucleus
nTPM: 33.8
1865 Male, age 51, unknown 43.6
1821 Female, age 72, unknown 41.7
2823 Male, age 76, right hemisphere 38.8
1904 Male, age 53, unknown 38.1
1954 Female, age 42, unknown 36.9
2503 Female, age 72, unknown 35.4
2769 Male, age 72, unknown 34.9
2227 Male, age 72, unknown 33.9
2785 Male, age 18, unknown 27.8
2725 Female, age 75, unknown 26.3
2588 Male, age 74, left hemisphere 25.8
2584 Male, age 75, left hemisphere 22.9
Substantia nigra
nTPM: 20.5
2583 Male, age 75, right hemisphere 25.2
2590 Female, age 75, unknown 23.1
2241 Male, age 72, unknown 22.8
1851 Male, age 51, unknown 22.0
2409 Female, age 72, unknown 21.9
1889 Female, age 72, unknown 20.8
1941 Male, age 53, unknown 20.5
2699 Male, age 18, unknown 19.4
1916 Female, age 42, unknown 16.3
2665 Male, age 74, both hemispheres 12.8
Superior colliculus
nTPM: 22.4
1913 Female, age 42, unknown 34.6
1895 Male, age 76, right hemisphere 28.7
1995 Male, age 72, unknown 27.0
2668 Female, age 75, unknown 26.8
2587 Male, age 74, left hemisphere 26.7
1839 Male, age 51, unknown 24.5
1796 Male, age 53, unknown 16.6
2261 Male, age 18, unknown 14.9
2087 Female, age 72, unknown 12.2
2664 Male, age 75, both hemispheres 11.5
Ventral tegmental area
nTPM: 23.5
2223 Female, age 72, unknown 37.2
2410 Female, age 72, unknown 25.8
2021 Male, age 53, unknown 20.6
1942 Male, age 51, unknown 20.0
1915 Female, age 42, unknown 19.4
2218 Male, age 76, both hemispheres 17.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 139

Max nTPM: 135.2
Min nTPM: 12.5
Std nTPM: 23.4
Median nTPM: 36.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 135.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 132.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 123.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 111.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 109.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 103.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 91.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 79.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 75.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.4
FF:10158-103A5 76 years, female 132.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 106.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.0
Samples: 4

Max nTPM: 123.5
Min nTPM: 57.2
Sample A Female 92.0
Sample B Female 57.2
Sample C Male 91.4
Sample D Male 123.5
Midbrain
nTPM: 106.6
Samples: 4

Max nTPM: 188.6
Min nTPM: 60.2
Sample A Female 188.6
Sample B Female 97.5
Sample C Male 60.2
Sample D Male 80.0
Periaqueductal gray
nTPM: 72.9
Samples: 3

Max nTPM: 80.7
Min nTPM: 65.7
Sample B Female 80.7
Sample C Male 65.7
Sample D Male 72.3
Superior colliculi
nTPM: 74.2
Samples: 4

Max nTPM: 99.3
Min nTPM: 40.4
Sample A Female 83.6
Sample B Female 40.4
Sample C Male 73.4
Sample D Male 99.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 105.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 105.9
Samples: 4

Max nTPM: 111.2
Min nTPM: 100.8
Sample A Male 104.4
Sample B Male 107.1
Sample C Female 111.2
Sample D Female 100.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
72472806 Antisense, RP_051101_02_F10, Mouse strain C57BL/6J (56 days, male) 6.0
69734476 Antisense, RP_050503_01_A05, Mouse strain C57BL/6J (56 days, male) 5.9
71213241 Antisense, RP_050816_04_B05, Mouse strain C57BL/6J (56 days, male) 0.7

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