BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:22.9 nTPM
HPA Brain:42.9 nTPM
GTEx:22.9 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:108.9 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035895
Glial cells High
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.3
2481 Female, age 94, left hemisphere 35.7
2288 Male, age 75, left hemisphere 31.5
1854 Male, age 80, left hemisphere 27.2
1857 Female, age 85, left hemisphere 26.8
2289 Male, age 61, right hemisphere 26.4
2290 Female, age 72, unknown 24.2
1781 Male, age 74, unknown 23.7
2846 Female, age 79, unknown 22.7
Globus pallidus, externus
nTPM: 42.9
1996 Male, age 80, right hemisphere 56.7
2772 Female, age 79, unknown 49.4
2646 Male, age 61, right hemisphere 40.0
2395 Male, age 75, both hemispheres 38.5
2567 Female, age 72, unknown 30.0
Globus pallidus, internus
nTPM: 42.7
2037 Male, age 80, right hemisphere 51.9
1818 Male, age 74, unknown 49.7
2287 Male, age 75, right hemisphere 44.7
2778 Female, age 91, both hemispheres 43.4
2483 Female, age 94, right hemisphere 41.5
2111 Female, age 85, right hemisphere 35.7
2566 Female, age 72, unknown 31.6
Nucleus accumbens
nTPM: 27.2
2286 Male, age 75, left hemisphere 35.2
2391 Female, age 94, left hemisphere 33.1
2698 Female, age 72, unknown 28.3
2732 Male, age 80, right hemisphere 28.1
1806 Female, age 85, left hemisphere 25.3
1856 Female, age 91, right hemisphere 24.4
2824 Male, age 61, right hemisphere 23.3
1783 Male, age 74, unknown 20.1
Nucleus basalis of Meynert
nTPM: 29.9
2569 Male, age 61, both hemispheres 39.8
2393 Male, age 80, right hemisphere 28.3
2821 Male, age 75, both hemispheres 27.4
2484 Female, age 94, left hemisphere 24.0
Nucleus of the diagonal band
nTPM: 29.3
1812 Female, age 91, both hemispheres 32.8
2775 Male, age 80, right hemisphere 30.1
2195 Female, age 85, both hemispheres 28.7
2029 Male, age 61, right hemisphere 28.3
1979 Male, age 74, unknown 26.6
Putamen
nTPM: 25.7
2482 Female, age 94, left hemisphere 33.1
1829 Male, age 74, unknown 28.0
1937 Female, age 91, right hemisphere 25.7
2647 Male, age 75, left hemisphere 24.1
1838 Male, age 80, right hemisphere 23.9
2466 Female, age 79, unknown 23.4
2489 Female, age 72, unknown 21.3
Septal nuclei
nTPM: 29.3
2629 Female, age 94, right hemisphere 33.1
2199 Male, age 80, right hemisphere 31.2
2031 Female, age 72, unknown 30.6
2009 Female, age 91, both hemispheres 28.9
2394 Male, age 61, left hemisphere 28.7
2059 Female, age 85, both hemispheres 26.5
1960 Male, age 74, unknown 26.2
Stria terminalis, bed nucleus
nTPM: 29.9
2201 Male, age 74, unknown 34.2
1974 Female, age 91, both hemispheres 29.0
2486 Female, age 94, both hemispheres 26.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.5
Samples: 246

Max nTPM: 60.7
Min nTPM: 12.8
Std nTPM: 4.8
Median nTPM: 20.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 60.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 38.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 33.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 33.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 31.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 31.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 31.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 31.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 30.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 30.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 29.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.7
Samples: 246

Max nTPM: 57.3
Min nTPM: 9.5
Std nTPM: 7.4
Median nTPM: 19.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 55.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 54.5
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 54.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 40.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 39.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 39.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 39.3
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 39.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 35.7
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 35.4
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Brain - Putamen (basal ganglia)
Average nTPM: 22.9
Samples: 205

Max nTPM: 48.6
Min nTPM: 11.7
Std nTPM: 6.1
Median nTPM: 21.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 48.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 46.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 46.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 40.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 39.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 39.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 37.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 36.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 36.1
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 35.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 35.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.2
FF:10164-103B2 76 years, female 31.2
Nucleus accumbens
Scaled Tags Per Million: 42.1
FF:10037-101F1 23-56 years, mixed 42.1
Putamen
Scaled Tags Per Million: 33.3
FF:10176-103C5 60 years, female 33.3
Globus pallidus
Scaled Tags Per Million: 45.3
FF:10161-103A8 76 years, female 49.8
FF:10175-103C4 60 years, female 40.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Caudate
nTPM: 15.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 15.2
Sample A Female 15.8
Sample B Female 15.9
Sample C Male 15.2
Sample D Male 16.0
Putamen
nTPM: 15.5
Samples: 4

Max nTPM: 16.3
Min nTPM: 13.3
Sample A Female 16.3
Sample B Female 13.3
Sample C Male 16.3
Sample D Male 16.0
Septum
nTPM: 17.3
Samples: 4

Max nTPM: 19.1
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 17.8
Sample C Male 16.4
Sample D Male 19.1
Ventral pallidum
nTPM: 15.9
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.7
Sample A Female 15.8
Sample B Female 15.0
Sample C Male 14.7
Sample D Male 18.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 108.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.4
Samples: 4

Max nTPM: 106.5
Min nTPM: 90.7
Sample A Male 105.1
Sample B Male 90.7
Sample C Female 106.5
Sample D Female 103.1
Septum
nTPM: 108.9
Samples: 4

Max nTPM: 118.5
Min nTPM: 101.0
Sample A Male 101.0
Sample B Male 118.5
Sample C Female 111.4
Sample D Female 104.6
Ventral forebrain
nTPM: 101.1
Samples: 4

Max nTPM: 103.8
Min nTPM: 100.0
Sample A Male 100.2
Sample B Male 100.0
Sample C Female 103.8
Sample D Female 100.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68637611 Antisense, RP_050126_01_C02, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.6
68637611 Antisense, RP_050126_01_C02, Mouse strain C57BL/6J (56 days, male) 0.6

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