MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:50.7 nTPM
GTEx:37.1 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:131.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.1
1870 Female, age 42, unknown 44.8
2411 Female, age 72, unknown 41.5
1827 Male, age 72, unknown 41.1
1833 Male, age 53, unknown 41.1
2828 Female, age 72, unknown 40.5
2019 Male, age 18, unknown 39.7
1830 Male, age 51, unknown 36.8
2586 Male, age 75, left hemisphere 33.3
2219 Male, age 76, both hemispheres 31.8
2666 Male, age 74, left hemisphere 30.5
Dorsal raphe nucleus
nTPM: 43.4
2016 Female, age 72, unknown 48.6
1828 Male, age 53, unknown 46.0
2298 Female, age 72, unknown 43.7
2047 Male, age 72, unknown 41.0
2750 Male, age 76, both hemispheres 37.8
Inferior colliculus
nTPM: 50.7
1848 Female, age 42, unknown 58.4
2097 Female, age 72, unknown 51.2
2849 Male, age 72, unknown 49.7
1890 Male, age 53, unknown 43.4
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Periaquaductal grey, anterior
nTPM: 35.7
2502 Female, age 75, unknown 40.0
1947 Male, age 18, unknown 36.0
1795 Male, age 51, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 45.0
1840 Male, age 53, unknown 54.3
2850 Male, age 76, both hemispheres 43.9
2464 Female, age 72, unknown 42.3
1831 Male, age 72, unknown 39.6
Periaquaductal grey, lateral
nTPM: 42.6
2053 Male, age 18, unknown 43.1
2140 Male, age 76, both hemispheres 42.9
2272 Male, age 74, both hemispheres 42.0
Pretectal area
nTPM: 41.8
2273 Male, age 74, both hemispheres 51.9
2316 Male, age 76, right hemisphere 46.5
2667 Female, age 75, unknown 46.0
2224 Female, age 72, unknown 42.8
1944 Female, age 72, unknown 41.3
1817 Female, age 42, unknown 40.9
1816 Male, age 51, unknown 39.7
2825 Male, age 18, unknown 39.4
1815 Male, age 53, unknown 38.7
2007 Male, age 72, unknown 38.2
2407 Male, age 75, both hemispheres 34.1
Red nucleus
nTPM: 39.7
1821 Female, age 72, unknown 48.3
1954 Female, age 42, unknown 45.7
2503 Female, age 72, unknown 42.8
2227 Male, age 72, unknown 42.2
2823 Male, age 76, right hemisphere 42.0
1865 Male, age 51, unknown 40.7
2769 Male, age 72, unknown 39.5
2725 Female, age 75, unknown 39.2
1904 Male, age 53, unknown 38.9
2785 Male, age 18, unknown 36.1
2588 Male, age 74, left hemisphere 35.3
2584 Male, age 75, left hemisphere 25.2
Substantia nigra
nTPM: 42.2
2241 Male, age 72, unknown 52.2
1916 Female, age 42, unknown 47.5
2699 Male, age 18, unknown 46.1
2409 Female, age 72, unknown 43.9
1851 Male, age 51, unknown 43.7
1889 Female, age 72, unknown 42.5
1941 Male, age 53, unknown 42.3
2590 Female, age 75, unknown 38.8
2665 Male, age 74, both hemispheres 33.0
2583 Male, age 75, right hemisphere 31.8
Superior colliculus
nTPM: 38.9
1895 Male, age 76, right hemisphere 45.8
1839 Male, age 51, unknown 45.7
2587 Male, age 74, left hemisphere 41.3
2087 Female, age 72, unknown 39.9
2664 Male, age 75, both hemispheres 39.0
2261 Male, age 18, unknown 37.2
1796 Male, age 53, unknown 36.7
1913 Female, age 42, unknown 35.4
1995 Male, age 72, unknown 34.5
2668 Female, age 75, unknown 33.3
Ventral tegmental area
nTPM: 40.7
1915 Female, age 42, unknown 44.7
2410 Female, age 72, unknown 43.2
2218 Male, age 76, both hemispheres 40.6
1942 Male, age 51, unknown 39.0
2223 Female, age 72, unknown 38.7
2021 Male, age 53, unknown 37.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.1
Samples: 139

Max nTPM: 82.3
Min nTPM: 19.4
Std nTPM: 11.4
Median nTPM: 34.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 82.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 80.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 76.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 72.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 70.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 59.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 56.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 54.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 53.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 53.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.4
FF:10158-103A5 76 years, female 51.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.5
Samples: 4

Max nTPM: 21.8
Min nTPM: 17.3
Sample A Female 18.2
Sample B Female 21.8
Sample C Male 17.3
Sample D Male 20.8
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 29.8
Min nTPM: 14.1
Sample A Female 29.8
Sample B Female 18.5
Sample C Male 14.1
Sample D Male 15.6
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 19.1
Min nTPM: 16.1
Sample B Female 19.1
Sample C Male 16.1
Sample D Male 18.0
Superior colliculi
nTPM: 17.6
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.5
Sample A Female 18.7
Sample B Female 20.1
Sample C Male 14.5
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 131.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.4
Samples: 4

Max nTPM: 135.4
Min nTPM: 127.1
Sample A Male 131.6
Sample B Male 135.4
Sample C Female 131.6
Sample D Female 127.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68637611 Antisense, RP_050126_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3

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