MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:160.6 nTPM
HPA Brain:346.1 nTPM
GTEx:160.6 nTPM
FANTOM5:102.5 Scaled Tags Per Million
Pig:719.8 nTPM
Mouse:810.5 nTPM
Allen mouse:12.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 346.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 208.5
2019 Male, age 18, unknown 266.9
1827 Male, age 72, unknown 265.6
2411 Female, age 72, unknown 257.3
2666 Male, age 74, left hemisphere 232.9
2219 Male, age 76, both hemispheres 228.0
1870 Female, age 42, unknown 178.8
2828 Female, age 72, unknown 173.2
1833 Male, age 53, unknown 163.4
2586 Male, age 75, left hemisphere 160.1
1830 Male, age 51, unknown 158.8
Dorsal raphe nucleus
nTPM: 255.0
2298 Female, age 72, unknown 345.7
2750 Male, age 76, both hemispheres 289.5
2047 Male, age 72, unknown 275.1
1828 Male, age 53, unknown 220.9
2016 Female, age 72, unknown 143.8
Inferior colliculus
nTPM: 198.2
2097 Female, age 72, unknown 236.7
2849 Male, age 72, unknown 189.2
1848 Female, age 42, unknown 188.4
1890 Male, age 53, unknown 178.5
Median raphe nucleus
nTPM: 346.1
2220 Male, age 76, midline 346.1
Periaquaductal grey, anterior
nTPM: 210.8
1795 Male, age 51, unknown 269.1
2502 Female, age 75, unknown 193.8
1947 Male, age 18, unknown 169.5
Periaquaductal grey, dorsal
nTPM: 203.2
1831 Male, age 72, unknown 221.1
1840 Male, age 53, unknown 208.0
2850 Male, age 76, both hemispheres 203.3
2464 Female, age 72, unknown 180.5
Periaquaductal grey, lateral
nTPM: 198.6
2272 Male, age 74, both hemispheres 240.6
2053 Male, age 18, unknown 184.9
2140 Male, age 76, both hemispheres 170.3
Pretectal area
nTPM: 292.1
1816 Male, age 51, unknown 457.9
1817 Female, age 42, unknown 407.6
2007 Male, age 72, unknown 403.1
1944 Female, age 72, unknown 370.1
1815 Male, age 53, unknown 344.5
2224 Female, age 72, unknown 280.0
2273 Male, age 74, both hemispheres 208.5
2825 Male, age 18, unknown 194.8
2407 Male, age 75, both hemispheres 190.7
2316 Male, age 76, right hemisphere 184.8
2667 Female, age 75, unknown 171.7
Red nucleus
nTPM: 157.0
2785 Male, age 18, unknown 273.0
2725 Female, age 75, unknown 225.8
2584 Male, age 75, left hemisphere 174.2
1821 Female, age 72, unknown 169.4
2823 Male, age 76, right hemisphere 144.7
2503 Female, age 72, unknown 141.0
1954 Female, age 42, unknown 134.2
2588 Male, age 74, left hemisphere 130.0
2769 Male, age 72, unknown 126.4
2227 Male, age 72, unknown 124.1
1865 Male, age 51, unknown 122.6
1904 Male, age 53, unknown 118.3
Substantia nigra
nTPM: 253.2
1941 Male, age 53, unknown 374.1
1889 Female, age 72, unknown 317.8
2665 Male, age 74, both hemispheres 277.1
1916 Female, age 42, unknown 260.3
2241 Male, age 72, unknown 258.3
2590 Female, age 75, unknown 233.4
2409 Female, age 72, unknown 225.2
1851 Male, age 51, unknown 223.0
2583 Male, age 75, right hemisphere 205.7
2699 Male, age 18, unknown 157.2
Superior colliculus
nTPM: 217.5
2087 Female, age 72, unknown 301.7
2261 Male, age 18, unknown 256.8
2668 Female, age 75, unknown 255.9
1796 Male, age 53, unknown 248.7
1895 Male, age 76, right hemisphere 231.6
2587 Male, age 74, left hemisphere 220.0
1839 Male, age 51, unknown 201.1
1913 Female, age 42, unknown 179.8
2664 Male, age 75, both hemispheres 148.7
1995 Male, age 72, unknown 130.9
Ventral tegmental area
nTPM: 234.1
2218 Male, age 76, both hemispheres 276.6
2223 Female, age 72, unknown 272.8
2410 Female, age 72, unknown 247.5
1915 Female, age 42, unknown 214.4
1942 Male, age 51, unknown 196.7
2021 Male, age 53, unknown 196.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 160.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 160.6
Samples: 139

Max nTPM: 1001.2
Min nTPM: 17.2
Std nTPM: 132.4
Median nTPM: 115.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1001.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 780.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 470.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 445.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 441.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 439.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 414.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 356.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 352.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 346.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 337.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.5
FF:10158-103A5 76 years, female 102.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 719.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 375.4
Samples: 4

Max nTPM: 562.7
Min nTPM: 205.8
Sample A Female 562.7
Sample B Female 281.4
Sample C Male 451.8
Sample D Male 205.8
Midbrain
nTPM: 620.7
Samples: 4

Max nTPM: 1116.9
Min nTPM: 332.8
Sample A Female 332.8
Sample B Female 352.5
Sample C Male 1116.9
Sample D Male 680.5
Periaqueductal gray
nTPM: 378.7
Samples: 3

Max nTPM: 496.7
Min nTPM: 316.6
Sample B Female 322.9
Sample C Male 496.7
Sample D Male 316.6
Superior colliculi
nTPM: 719.8
Samples: 4

Max nTPM: 1126.5
Min nTPM: 533.3
Sample A Female 662.9
Sample B Female 533.3
Sample C Male 1126.5
Sample D Male 556.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 810.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 810.5
Samples: 4

Max nTPM: 827.3
Min nTPM: 791.7
Sample A Male 791.7
Sample B Male 816.4
Sample C Female 827.3
Sample D Female 806.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
1127 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 12.5
1128 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 11.3

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