HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		26.828
RNA expressioni
Consensus:8.1 nTPM
HPA Brain:9.1 nTPM
GTEx:8.1 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:1.8 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA075997Antibody CAB001943
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA065566
Hippocampal formation mean intensity 26.828
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 16.417
Molecular layer of the dentate gyrus 11.257
Granular dentate gyrus 26.828
CA1 - oriens layer 11.554
CA1 - pyramidal layer 18.699
CA1 - radiatum layer 11.623
CA2 - oriens layer 15.820
CA2 - pyramidal layer 21.571
CA2 - radiatum layer 12.992
CA3 - oriens layer 11.577
CA3 - pyramidal layer 13.271
CA3 - radiatum layer 12.559
Stratum lucidum 12.823
Lacunosum moleculare 11.623
Subiculum 7.355

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.1
Sample id Sample description nTPM
Hippocampus
nTPM: 7.3
2621 Female, age 67, right hemisphere 10.5
1855 Male, age 76, left hemisphere 9.1
1911 Female, age 85, right hemisphere 7.2
2148 Female, age 91, left hemisphere 6.6
2529 Female, age 94, left hemisphere 5.8
1898 Male, age 80, left hemisphere 4.4
Dentate gyrus
nTPM: 7.2
2531 Female, age 67, both hemispheres 10.9
2010 Male, age 76, both hemispheres 9.0
2530 Female, age 94, left hemisphere 7.6
1927 Female, age 91, both hemispheres 6.8
2246 Female, age 85, both hemispheres 4.6
2528 Male, age 74, both hemispheres 4.5
Entorhinal gyrus
nTPM: 6.1
2686 Male, age 75, right hemisphere 10.8
1787 Male, age 76, left hemisphere 6.4
2117 Female, age 91, right hemisphere 5.4
2613 Female, age 94, left hemisphere 5.4
2764 Male, age 80, right hemisphere 4.9
1938 Female, age 85, left hemisphere 3.5
Hippocampus, CA1
nTPM: 9.1
2749 Male, age 80, left hemisphere 17.8
1873 Female, age 85, both hemispheres 9.0
2045 Male, age 76, both hemispheres 8.1
2527 Male, age 74, both hemispheres 5.7
2082 Female, age 91, right hemisphere 5.0
Hippocampus, CA2
nTPM: 8.3
1963 Male, age 80, left hemisphere 20.1
1892 Male, age 76, both hemispheres 9.7
2437 Female, age 94, left hemisphere 6.2
1940 Female, age 85, left hemisphere 4.6
2113 Female, age 91, right hemisphere 4.5
2249 Male, age 74, both hemispheres 4.5
Hippocampus, CA3
nTPM: 6.8
2861 Female, age 67, both hemispheres 14.5
2620 Female, age 94, left hemisphere 8.8
1867 Male, age 76, both hemispheres 6.6
1891 Female, age 85, both hemispheres 4.5
2137 Male, age 80, left hemisphere 4.0
2436 Male, age 74, both hemispheres 2.1
Parahippocampal cortex
nTPM: 5.0
2622 Female, age 67, right hemisphere 8.9
2693 Female, age 94, both hemispheres 6.2
1990 Female, age 91, right hemisphere 5.7
2018 Male, age 76, both hemispheres 5.5
2692 Male, age 74, both hemispheres 4.9
2532 Female, age 72, left hemisphere 4.4
2250 Female, age 67, right hemisphere 4.1
1850 Male, age 80, both hemispheres 4.0
1933 Female, age 85, both hemispheres 3.4
2245 Female, age 91, both hemispheres 3.0
Perirhinal gyrus
nTPM: 4.2
2848 Male, age 76, right hemisphere 5.7
1841 Female, age 85, right hemisphere 4.7
2521 Female, age 94, right hemisphere 4.5
1847 Female, age 91, left hemisphere 3.3
1794 Male, age 80, right hemisphere 3.0
Subiculum
nTPM: 4.9
2729 Female, age 91, right hemisphere 6.2
2619 Male, age 74, both hemispheres 5.7
2042 Male, age 76, both hemispheres 5.1
1977 Female, age 85, both hemispheres 4.2
2438 Female, age 94, left hemisphere 4.2
1901 Male, age 80, both hemispheres 3.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.1
Samples: 197

Max nTPM: 21.7
Min nTPM: 1.3
Std nTPM: 4.2
Median nTPM: 7.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 21.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 21.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 20.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 20.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 19.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 19.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 17.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 16.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 16.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 16.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 16.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 2.7
FF:10153-102I9 76 years, female 4.4
FF:10169-103B7 60 years, female 1.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 0.9
Pig sample Sample description nTPM
Subiculum
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.8
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.8
Dorsal hippocampus
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.9
Sample B Female 0.7
Sample C Male 0.5
Sample D Male 0.7
Entorhinal cortex
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Female 1.1
Sample B Female 0.8
Sample C Male 0.9
Sample D Male 0.5
Ventral hippocampus
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 0.8
Sample C Male 1.2
Sample D Male 0.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.8
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.4
Sample A Male 1.4
Sample B Male 1.4
Sample C Female 2.6
Sample D Female 1.7
Hippocampal formation
nTPM: 1.5
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 2.1
Sample C Female 1.3
Sample D Female 2.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
70813257 Antisense, RP_050712_03_E04, Mouse strain C57BL/6J (56 days, male) 0.3
69855739 Antisense, RP_050331_01_B06, Mouse strain C57BL/6J (56 days, male) 0.0
72109410 Antisense, RP_050712_03_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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