MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:293.8 nTPM
HPA Brain:180.5 nTPM
GTEx:293.8 nTPM
FANTOM5:488.1 Scaled Tags Per Million
Pig:143.8 nTPM
Mouse:101.0 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 180.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 157.2
2019 Male, age 18, unknown 200.0
2666 Male, age 74, left hemisphere 194.6
2586 Male, age 75, left hemisphere 181.4
1827 Male, age 72, unknown 153.3
2411 Female, age 72, unknown 153.0
2828 Female, age 72, unknown 143.1
1830 Male, age 51, unknown 142.0
1833 Male, age 53, unknown 141.4
1870 Female, age 42, unknown 138.7
2219 Male, age 76, both hemispheres 124.6
Dorsal raphe nucleus
nTPM: 139.7
2750 Male, age 76, both hemispheres 170.0
1828 Male, age 53, unknown 157.2
2047 Male, age 72, unknown 128.1
2298 Female, age 72, unknown 126.3
2016 Female, age 72, unknown 116.7
Inferior colliculus
nTPM: 129.9
1890 Male, age 53, unknown 158.7
2097 Female, age 72, unknown 140.5
1848 Female, age 42, unknown 110.3
2849 Male, age 72, unknown 110.3
Median raphe nucleus
nTPM: 164.1
2220 Male, age 76, midline 164.1
Periaquaductal grey, anterior
nTPM: 130.5
2502 Female, age 75, unknown 144.0
1795 Male, age 51, unknown 127.3
1947 Male, age 18, unknown 120.0
Periaquaductal grey, dorsal
nTPM: 132.1
2850 Male, age 76, both hemispheres 171.9
1831 Male, age 72, unknown 146.3
2464 Female, age 72, unknown 122.6
1840 Male, age 53, unknown 87.6
Periaquaductal grey, lateral
nTPM: 126.6
2140 Male, age 76, both hemispheres 148.5
2053 Male, age 18, unknown 118.5
2272 Male, age 74, both hemispheres 112.7
Pretectal area
nTPM: 156.0
2007 Male, age 72, unknown 207.3
1817 Female, age 42, unknown 197.5
1815 Male, age 53, unknown 189.5
1816 Male, age 51, unknown 180.6
1944 Female, age 72, unknown 171.5
2407 Male, age 75, both hemispheres 157.5
2667 Female, age 75, unknown 133.0
2316 Male, age 76, right hemisphere 129.0
2825 Male, age 18, unknown 120.4
2224 Female, age 72, unknown 115.2
2273 Male, age 74, both hemispheres 114.5
Red nucleus
nTPM: 180.5
1904 Male, age 53, unknown 207.9
2785 Male, age 18, unknown 204.1
1821 Female, age 72, unknown 202.0
1865 Male, age 51, unknown 197.1
1954 Female, age 42, unknown 176.1
2503 Female, age 72, unknown 175.8
2588 Male, age 74, left hemisphere 175.0
2227 Male, age 72, unknown 171.8
2769 Male, age 72, unknown 168.7
2823 Male, age 76, right hemisphere 165.2
2725 Female, age 75, unknown 164.9
2584 Male, age 75, left hemisphere 156.9
Substantia nigra
nTPM: 174.7
1916 Female, age 42, unknown 235.9
1851 Male, age 51, unknown 189.3
2699 Male, age 18, unknown 180.6
1889 Female, age 72, unknown 173.7
2583 Male, age 75, right hemisphere 168.9
1941 Male, age 53, unknown 167.1
2409 Female, age 72, unknown 166.1
2665 Male, age 74, both hemispheres 163.3
2590 Female, age 75, unknown 150.8
2241 Male, age 72, unknown 150.7
Superior colliculus
nTPM: 148.3
2668 Female, age 75, unknown 191.0
1913 Female, age 42, unknown 164.6
1995 Male, age 72, unknown 154.8
2087 Female, age 72, unknown 153.6
2587 Male, age 74, left hemisphere 144.0
2261 Male, age 18, unknown 140.7
2664 Male, age 75, both hemispheres 140.3
1796 Male, age 53, unknown 138.0
1839 Male, age 51, unknown 129.8
1895 Male, age 76, right hemisphere 126.8
Ventral tegmental area
nTPM: 152.7
2223 Female, age 72, unknown 173.3
2410 Female, age 72, unknown 168.9
1915 Female, age 42, unknown 160.6
2218 Male, age 76, both hemispheres 144.1
1942 Male, age 51, unknown 135.7
2021 Male, age 53, unknown 133.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 293.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 293.8
Samples: 139

Max nTPM: 598.9
Min nTPM: 155.3
Std nTPM: 87.2
Median nTPM: 265.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 598.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 579.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 551.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 522.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 521.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 502.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 499.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 475.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 475.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 466.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 460.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 488.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 488.1
FF:10158-103A5 76 years, female 488.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 143.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.6
Samples: 4

Max nTPM: 143.8
Min nTPM: 117.6
Sample A Female 143.8
Sample B Female 117.6
Sample C Male 131.9
Sample D Male 137.1
Midbrain
nTPM: 143.8
Samples: 4

Max nTPM: 202.0
Min nTPM: 114.1
Sample A Female 202.0
Sample B Female 114.1
Sample C Male 132.4
Sample D Male 126.6
Periaqueductal gray
nTPM: 104.0
Samples: 3

Max nTPM: 113.6
Min nTPM: 98.5
Sample B Female 99.9
Sample C Male 113.6
Sample D Male 98.5
Superior colliculi
nTPM: 143.0
Samples: 4

Max nTPM: 169.3
Min nTPM: 113.0
Sample A Female 169.3
Sample B Female 113.0
Sample C Male 146.3
Sample D Male 143.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.0
Samples: 4

Max nTPM: 106.9
Min nTPM: 95.1
Sample A Male 106.9
Sample B Male 101.8
Sample C Female 95.1
Sample D Female 100.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
69288650 Antisense, RP_050407_01_D10, Mouse strain C57BL/6J (56 days, male) 7.0

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