HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:79.0 nTPM
HPA Brain:64.4 nTPM
GTEx:79.0 nTPM
FANTOM5:137.2 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:174.0 nTPM
Allen mouse:12.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA053440
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.4
Sample id Sample description nTPM
Hippocampus
nTPM: 53.7
1898 Male, age 80, left hemisphere 67.6
2621 Female, age 67, right hemisphere 54.7
2529 Female, age 94, left hemisphere 53.2
1855 Male, age 76, left hemisphere 53.0
1911 Female, age 85, right hemisphere 47.5
2148 Female, age 91, left hemisphere 46.3
Dentate gyrus
nTPM: 54.0
1927 Female, age 91, both hemispheres 58.5
2010 Male, age 76, both hemispheres 58.4
2530 Female, age 94, left hemisphere 58.1
2528 Male, age 74, both hemispheres 51.9
2246 Female, age 85, both hemispheres 50.8
2531 Female, age 67, both hemispheres 46.2
Entorhinal gyrus
nTPM: 51.9
2764 Male, age 80, right hemisphere 59.0
1938 Female, age 85, left hemisphere 56.9
2117 Female, age 91, right hemisphere 56.8
1787 Male, age 76, left hemisphere 52.3
2613 Female, age 94, left hemisphere 47.9
2686 Male, age 75, right hemisphere 38.6
Hippocampus, CA1
nTPM: 59.3
2749 Male, age 80, left hemisphere 75.0
2527 Male, age 74, both hemispheres 59.0
1873 Female, age 85, both hemispheres 55.3
2045 Male, age 76, both hemispheres 54.0
2082 Female, age 91, right hemisphere 53.4
Hippocampus, CA2
nTPM: 57.7
2249 Male, age 74, both hemispheres 66.1
1892 Male, age 76, both hemispheres 64.0
1963 Male, age 80, left hemisphere 60.1
2113 Female, age 91, right hemisphere 53.6
1940 Female, age 85, left hemisphere 52.7
2437 Female, age 94, left hemisphere 50.0
Hippocampus, CA3
nTPM: 56.7
2436 Male, age 74, both hemispheres 74.2
1867 Male, age 76, both hemispheres 64.9
2137 Male, age 80, left hemisphere 63.4
1891 Female, age 85, both hemispheres 53.7
2620 Female, age 94, left hemisphere 47.8
2861 Female, age 67, both hemispheres 36.3
Parahippocampal cortex
nTPM: 56.5
1850 Male, age 80, both hemispheres 66.9
2250 Female, age 67, right hemisphere 64.5
1933 Female, age 85, both hemispheres 62.5
1990 Female, age 91, right hemisphere 61.0
2245 Female, age 91, both hemispheres 59.5
2018 Male, age 76, both hemispheres 57.8
2532 Female, age 72, left hemisphere 53.8
2692 Male, age 74, both hemispheres 50.6
2693 Female, age 94, both hemispheres 47.8
2622 Female, age 67, right hemisphere 40.3
Perirhinal gyrus
nTPM: 64.4
1847 Female, age 91, left hemisphere 72.0
1794 Male, age 80, right hemisphere 69.9
1841 Female, age 85, right hemisphere 64.6
2521 Female, age 94, right hemisphere 61.7
2848 Male, age 76, right hemisphere 53.6
Subiculum
nTPM: 54.9
1977 Female, age 85, both hemispheres 60.4
1901 Male, age 80, both hemispheres 59.5
2042 Male, age 76, both hemispheres 57.1
2438 Female, age 94, left hemisphere 54.0
2729 Female, age 91, right hemisphere 49.8
2619 Male, age 74, both hemispheres 48.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 79.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 79.0
Samples: 197

Max nTPM: 165.8
Min nTPM: 40.8
Std nTPM: 16.5
Median nTPM: 77.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 165.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 120.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 114.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 114.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 113.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 113.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 113.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 110.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 109.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 108.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 108.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 137.2
FF:10169-103B7 60 years, female 151.6
FF:10153-102I9 76 years, female 122.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.2
Pig sample Sample description nTPM
Subiculum
nTPM: 46.2
Samples: 4

Max nTPM: 59.8
Min nTPM: 41.4
Sample A Female 59.8
Sample B Female 41.6
Sample C Male 41.4
Sample D Male 41.8
Dorsal hippocampus
nTPM: 55.2
Samples: 4

Max nTPM: 71.3
Min nTPM: 40.0
Sample A Female 71.3
Sample B Female 53.2
Sample C Male 56.2
Sample D Male 40.0
Entorhinal cortex
nTPM: 51.8
Samples: 4

Max nTPM: 60.2
Min nTPM: 41.0
Sample A Female 58.0
Sample B Female 60.2
Sample C Male 47.9
Sample D Male 41.0
Ventral hippocampus
nTPM: 47.1
Samples: 4

Max nTPM: 51.9
Min nTPM: 39.4
Sample A Female 48.4
Sample B Female 39.4
Sample C Male 48.6
Sample D Male 51.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 174.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 171.0
Samples: 4

Max nTPM: 186.3
Min nTPM: 162.3
Sample A Male 168.4
Sample B Male 186.3
Sample C Female 162.3
Sample D Female 167.0
Hippocampal formation
nTPM: 174.0
Samples: 4

Max nTPM: 191.4
Min nTPM: 158.2
Sample A Male 191.4
Sample B Male 158.2
Sample C Female 167.9
Sample D Female 178.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.9
68798813 Antisense, RP_050217_01_D02, Mouse strain C57BL/6J (56 days, male) 12.9

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