HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:25.0 nTPM
HPA Brain:39.8 nTPM
GTEx:25.0 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:140.5 nTPM
Allen mouse:23.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015970
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Hippocampus
nTPM: 33.3
2148 Female, age 91, left hemisphere 41.0
2621 Female, age 67, right hemisphere 37.5
1855 Male, age 76, left hemisphere 36.1
1898 Male, age 80, left hemisphere 35.4
1911 Female, age 85, right hemisphere 29.7
2529 Female, age 94, left hemisphere 20.0
Dentate gyrus
nTPM: 38.3
1927 Female, age 91, both hemispheres 53.7
2531 Female, age 67, both hemispheres 41.6
2010 Male, age 76, both hemispheres 38.5
2530 Female, age 94, left hemisphere 34.7
2246 Female, age 85, both hemispheres 31.8
2528 Male, age 74, both hemispheres 29.8
Entorhinal gyrus
nTPM: 28.9
2613 Female, age 94, left hemisphere 43.0
2686 Male, age 75, right hemisphere 32.2
2764 Male, age 80, right hemisphere 31.6
1938 Female, age 85, left hemisphere 27.1
1787 Male, age 76, left hemisphere 20.8
2117 Female, age 91, right hemisphere 18.6
Hippocampus, CA1
nTPM: 39.8
2749 Male, age 80, left hemisphere 57.4
1873 Female, age 85, both hemispheres 44.1
2045 Male, age 76, both hemispheres 39.3
2527 Male, age 74, both hemispheres 30.4
2082 Female, age 91, right hemisphere 27.6
Hippocampus, CA2
nTPM: 32.2
1892 Male, age 76, both hemispheres 45.5
1963 Male, age 80, left hemisphere 44.2
2437 Female, age 94, left hemisphere 31.1
2113 Female, age 91, right hemisphere 24.7
2249 Male, age 74, both hemispheres 24.3
1940 Female, age 85, left hemisphere 23.3
Hippocampus, CA3
nTPM: 35.9
2620 Female, age 94, left hemisphere 45.9
2137 Male, age 80, left hemisphere 45.7
2861 Female, age 67, both hemispheres 39.2
1867 Male, age 76, both hemispheres 36.5
1891 Female, age 85, both hemispheres 26.2
2436 Male, age 74, both hemispheres 21.9
Parahippocampal cortex
nTPM: 26.3
2693 Female, age 94, both hemispheres 30.6
2622 Female, age 67, right hemisphere 29.5
1850 Male, age 80, both hemispheres 29.3
1933 Female, age 85, both hemispheres 28.1
2245 Female, age 91, both hemispheres 27.3
2532 Female, age 72, left hemisphere 26.3
1990 Female, age 91, right hemisphere 24.8
2250 Female, age 67, right hemisphere 23.1
2692 Male, age 74, both hemispheres 23.0
2018 Male, age 76, both hemispheres 21.2
Perirhinal gyrus
nTPM: 29.7
1847 Female, age 91, left hemisphere 35.6
1794 Male, age 80, right hemisphere 32.0
2521 Female, age 94, right hemisphere 31.8
1841 Female, age 85, right hemisphere 25.9
2848 Male, age 76, right hemisphere 23.3
Subiculum
nTPM: 27.3
2729 Female, age 91, right hemisphere 32.8
1901 Male, age 80, both hemispheres 30.1
1977 Female, age 85, both hemispheres 29.1
2438 Female, age 94, left hemisphere 28.4
2042 Male, age 76, both hemispheres 25.0
2619 Male, age 74, both hemispheres 18.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.0
Samples: 197

Max nTPM: 70.2
Min nTPM: 3.4
Std nTPM: 13.4
Median nTPM: 23.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 70.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 65.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 59.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 58.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 57.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 56.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 55.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 52.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 51.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 51.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 50.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 34.4
FF:10169-103B7 60 years, female 43.6
FF:10153-102I9 76 years, female 25.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Subiculum
nTPM: 6.0
Samples: 4

Max nTPM: 9.1
Min nTPM: 4.1
Sample A Female 9.1
Sample B Female 5.0
Sample C Male 5.9
Sample D Male 4.1
Dorsal hippocampus
nTPM: 10.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 6.1
Sample A Female 15.4
Sample B Female 13.1
Sample C Male 6.1
Sample D Male 9.0
Entorhinal cortex
nTPM: 6.2
Samples: 4

Max nTPM: 6.3
Min nTPM: 6.0
Sample A Female 6.2
Sample B Female 6.3
Sample C Male 6.2
Sample D Male 6.0
Ventral hippocampus
nTPM: 9.4
Samples: 4

Max nTPM: 11.3
Min nTPM: 6.1
Sample A Female 10.1
Sample B Female 6.1
Sample C Male 10.2
Sample D Male 11.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 140.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 77.8
Samples: 4

Max nTPM: 88.9
Min nTPM: 57.6
Sample A Male 85.7
Sample B Male 88.9
Sample C Female 79.1
Sample D Female 57.6
Hippocampal formation
nTPM: 140.5
Samples: 4

Max nTPM: 163.7
Min nTPM: 123.4
Sample A Male 123.4
Sample B Male 163.7
Sample C Female 139.8
Sample D Female 134.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.6
393241 Antisense, RP_040804_02_G10, Mouse strain C57BL/6J (56 days, male) 23.6

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