MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.4 nTPM
HPA Brain:74.9 nTPM
GTEx:5.4 nTPM
FANTOM5:232.0 Scaled Tags Per Million
Pig:50.2 nTPM
Mouse:18.6 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2411 Female, age 72, unknown 69.6
2019 Male, age 18, unknown 65.4
1833 Male, age 53, unknown 63.8
1827 Male, age 72, unknown 60.7
1830 Male, age 51, unknown 57.4
2586 Male, age 75, left hemisphere 57.0
2666 Male, age 74, left hemisphere 54.6
1870 Female, age 42, unknown 54.5
2219 Male, age 76, both hemispheres 53.8
2828 Female, age 72, unknown 52.9
Dorsal raphe nucleus
nTPM: 71.9
2016 Female, age 72, unknown 79.5
2047 Male, age 72, unknown 76.2
1828 Male, age 53, unknown 74.4
2298 Female, age 72, unknown 66.9
2750 Male, age 76, both hemispheres 62.7
Inferior colliculus
nTPM: 74.9
2097 Female, age 72, unknown 80.8
1890 Male, age 53, unknown 80.6
1848 Female, age 42, unknown 74.9
2849 Male, age 72, unknown 63.5
Median raphe nucleus
nTPM: 65.9
2220 Male, age 76, midline 65.9
Periaquaductal grey, anterior
nTPM: 60.8
2502 Female, age 75, unknown 67.1
1947 Male, age 18, unknown 58.3
1795 Male, age 51, unknown 57.1
Periaquaductal grey, dorsal
nTPM: 70.3
2464 Female, age 72, unknown 76.0
2850 Male, age 76, both hemispheres 72.8
1840 Male, age 53, unknown 71.8
1831 Male, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 65.8
2140 Male, age 76, both hemispheres 70.6
2272 Male, age 74, both hemispheres 65.9
2053 Male, age 18, unknown 61.1
Pretectal area
nTPM: 64.7
2273 Male, age 74, both hemispheres 79.0
1944 Female, age 72, unknown 70.7
2667 Female, age 75, unknown 68.1
2316 Male, age 76, right hemisphere 67.8
1816 Male, age 51, unknown 67.7
1817 Female, age 42, unknown 65.4
2224 Female, age 72, unknown 62.7
2007 Male, age 72, unknown 62.6
2825 Male, age 18, unknown 59.1
1815 Male, age 53, unknown 57.2
2407 Male, age 75, both hemispheres 51.6
Red nucleus
nTPM: 65.4
1821 Female, age 72, unknown 80.5
1954 Female, age 42, unknown 71.3
2503 Female, age 72, unknown 70.7
2769 Male, age 72, unknown 69.5
2227 Male, age 72, unknown 69.3
1904 Male, age 53, unknown 66.7
2823 Male, age 76, right hemisphere 65.5
1865 Male, age 51, unknown 64.7
2588 Male, age 74, left hemisphere 63.9
2785 Male, age 18, unknown 57.9
2725 Female, age 75, unknown 57.8
2584 Male, age 75, left hemisphere 47.0
Substantia nigra
nTPM: 73.6
1916 Female, age 42, unknown 86.6
2699 Male, age 18, unknown 86.5
2241 Male, age 72, unknown 83.4
2409 Female, age 72, unknown 74.6
1851 Male, age 51, unknown 73.6
1941 Male, age 53, unknown 70.4
1889 Female, age 72, unknown 69.7
2665 Male, age 74, both hemispheres 65.6
2590 Female, age 75, unknown 65.3
2583 Male, age 75, right hemisphere 60.6
Superior colliculus
nTPM: 59.6
2087 Female, age 72, unknown 69.7
2668 Female, age 75, unknown 63.8
2261 Male, age 18, unknown 61.5
1839 Male, age 51, unknown 60.7
2587 Male, age 74, left hemisphere 58.5
1796 Male, age 53, unknown 57.8
1995 Male, age 72, unknown 57.8
1895 Male, age 76, right hemisphere 56.9
2664 Male, age 75, both hemispheres 56.9
1913 Female, age 42, unknown 52.3
Ventral tegmental area
nTPM: 64.6
2410 Female, age 72, unknown 69.8
2223 Female, age 72, unknown 65.7
1942 Male, age 51, unknown 65.0
1915 Female, age 42, unknown 64.8
2218 Male, age 76, both hemispheres 61.9
2021 Male, age 53, unknown 60.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.4
Samples: 139

Max nTPM: 13.0
Min nTPM: 1.0
Std nTPM: 1.9
Median nTPM: 5.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 10.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 10.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 10.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 9.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 8.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 8.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 8.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 7.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 232.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 232.0
FF:10158-103A5 76 years, female 232.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.2
Samples: 4

Max nTPM: 57.8
Min nTPM: 45.6
Sample A Female 57.8
Sample B Female 49.7
Sample C Male 47.8
Sample D Male 45.6
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 56.9
Min nTPM: 46.7
Sample A Female 48.4
Sample B Female 56.9
Sample C Male 46.7
Sample D Male 48.7
Periaqueductal gray
nTPM: 48.5
Samples: 3

Max nTPM: 50.8
Min nTPM: 46.3
Sample B Female 50.8
Sample C Male 48.3
Sample D Male 46.3
Superior colliculi
nTPM: 49.0
Samples: 4

Max nTPM: 55.4
Min nTPM: 44.9
Sample A Female 55.4
Sample B Female 44.9
Sample C Male 49.9
Sample D Male 45.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 21.1
Min nTPM: 16.6
Sample A Male 16.6
Sample B Male 19.2
Sample C Female 21.1
Sample D Female 17.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68301622 Antisense, RP_041130_01_E08, Mouse strain C57BL/6J (56 days, male) 3.0

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