HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:58.6 nTPM
GTEx:3.7 nTPM
FANTOM5:234.3 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:18.1 nTPM
Allen mouse:6.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022817
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 58.6
Sample id Sample description nTPM
Hippocampus
nTPM: 54.2
1911 Female, age 85, right hemisphere 59.9
2529 Female, age 94, left hemisphere 58.2
1898 Male, age 80, left hemisphere 54.9
2148 Female, age 91, left hemisphere 52.0
1855 Male, age 76, left hemisphere 51.6
2621 Female, age 67, right hemisphere 48.5
Dentate gyrus
nTPM: 51.8
2528 Male, age 74, both hemispheres 62.0
1927 Female, age 91, both hemispheres 57.6
2246 Female, age 85, both hemispheres 52.1
2010 Male, age 76, both hemispheres 50.1
2531 Female, age 67, both hemispheres 44.7
2530 Female, age 94, left hemisphere 44.5
Entorhinal gyrus
nTPM: 47.6
2117 Female, age 91, right hemisphere 55.0
1938 Female, age 85, left hemisphere 53.2
2686 Male, age 75, right hemisphere 46.3
1787 Male, age 76, left hemisphere 45.6
2764 Male, age 80, right hemisphere 45.5
2613 Female, age 94, left hemisphere 40.2
Hippocampus, CA1
nTPM: 58.6
2527 Male, age 74, both hemispheres 64.7
1873 Female, age 85, both hemispheres 61.5
2749 Male, age 80, left hemisphere 59.2
2082 Female, age 91, right hemisphere 57.2
2045 Male, age 76, both hemispheres 50.4
Hippocampus, CA2
nTPM: 55.8
2113 Female, age 91, right hemisphere 67.2
2249 Male, age 74, both hemispheres 65.4
1963 Male, age 80, left hemisphere 57.1
1940 Female, age 85, left hemisphere 50.1
1892 Male, age 76, both hemispheres 48.6
2437 Female, age 94, left hemisphere 46.7
Hippocampus, CA3
nTPM: 54.6
2137 Male, age 80, left hemisphere 68.2
2436 Male, age 74, both hemispheres 65.8
1891 Female, age 85, both hemispheres 54.0
1867 Male, age 76, both hemispheres 52.8
2620 Female, age 94, left hemisphere 46.5
2861 Female, age 67, both hemispheres 40.6
Parahippocampal cortex
nTPM: 52.2
1933 Female, age 85, both hemispheres 58.6
1850 Male, age 80, both hemispheres 56.2
2693 Female, age 94, both hemispheres 56.2
2250 Female, age 67, right hemisphere 56.0
2245 Female, age 91, both hemispheres 53.1
2692 Male, age 74, both hemispheres 52.6
2018 Male, age 76, both hemispheres 51.0
1990 Female, age 91, right hemisphere 49.3
2622 Female, age 67, right hemisphere 45.7
2532 Female, age 72, left hemisphere 43.5
Perirhinal gyrus
nTPM: 54.6
1841 Female, age 85, right hemisphere 59.5
2521 Female, age 94, right hemisphere 57.2
1847 Female, age 91, left hemisphere 56.1
1794 Male, age 80, right hemisphere 53.1
2848 Male, age 76, right hemisphere 47.3
Subiculum
nTPM: 55.8
2729 Female, age 91, right hemisphere 63.3
2438 Female, age 94, left hemisphere 61.0
1901 Male, age 80, both hemispheres 55.2
2619 Male, age 74, both hemispheres 54.4
1977 Female, age 85, both hemispheres 53.1
2042 Male, age 76, both hemispheres 47.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3.7
Samples: 197

Max nTPM: 7.9
Min nTPM: 1.3
Std nTPM: 1.2
Median nTPM: 3.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 7.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 7.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 7.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 7.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 7.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 7.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 6.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 6.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 6.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 6.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 6.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 234.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 234.3
FF:10169-103B7 60 years, female 271.0
FF:10153-102I9 76 years, female 197.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Subiculum
nTPM: 43.5
Samples: 4

Max nTPM: 50.9
Min nTPM: 39.2
Sample A Female 50.9
Sample B Female 42.5
Sample C Male 39.2
Sample D Male 41.4
Dorsal hippocampus
nTPM: 46.5
Samples: 4

Max nTPM: 51.1
Min nTPM: 41.2
Sample A Female 51.1
Sample B Female 44.3
Sample C Male 49.3
Sample D Male 41.2
Entorhinal cortex
nTPM: 47.7
Samples: 4

Max nTPM: 56.8
Min nTPM: 42.2
Sample A Female 46.0
Sample B Female 56.8
Sample C Male 45.6
Sample D Male 42.2
Ventral hippocampus
nTPM: 43.8
Samples: 4

Max nTPM: 49.3
Min nTPM: 38.3
Sample A Female 49.3
Sample B Female 41.9
Sample C Male 38.3
Sample D Male 45.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.0
Samples: 4

Max nTPM: 19.4
Min nTPM: 12.8
Sample A Male 19.4
Sample B Male 12.8
Sample C Female 18.1
Sample D Female 17.5
Hippocampal formation
nTPM: 18.2
Samples: 4

Max nTPM: 18.6
Min nTPM: 17.7
Sample A Male 18.6
Sample B Male 17.7
Sample C Female 17.9
Sample D Female 18.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
68301622 Antisense, RP_041130_01_E08, Mouse strain C57BL/6J (56 days, male) 6.5

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