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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
59.1
nTPM
Monaco:
222.5
nTPM
Schmiedel:
128.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
59.1
HPA sample
nTPM
gdT-cell nTPM: 34.2
Samples: 6
Max nTPM: 40.0
Min nTPM: 25.4
P10809_1007
33.6
P10809_1022
37.9
P10809_1041
30.6
P10809_1060
25.4
P10809_1077
40.0
P10809_1098
37.7
MAIT T-cell nTPM: 59.1
Samples: 6
Max nTPM: 84.7
Min nTPM: 36.6
P10809_1006
49.9
P10809_1024
66.6
P10809_1043
36.6
P10809_1062
60.5
P10809_1083
56.1
P10809_1097
84.7
Memory CD4 T-cell nTPM: 36.3
Samples: 6
Max nTPM: 55.0
Min nTPM: 24.6
P10809_1014
38.1
P10809_1026
24.6
P10809_1045
30.9
P10809_1064
29.7
P10809_1086
55.0
P10809_1113
39.7
Memory CD8 T-cell nTPM: 34.1
Samples: 5
Max nTPM: 44.8
Min nTPM: 26.8
P10809_1012
35.8
P10809_1027
26.8
P10809_1046
27.1
P10809_1065
36.1
P10809_1111
44.8
Naive CD4 T-cell nTPM: 20.3
Samples: 6
Max nTPM: 30.7
Min nTPM: 11.9
P10809_1015
23.0
P10809_1030
15.0
P10809_1049
11.9
P10809_1068
21.0
P10809_1085
30.7
P10809_1112
20.0
Naive CD8 T-cell nTPM: 23.6
Samples: 6
Max nTPM: 42.4
Min nTPM: 16.4
P10809_1016
18.4
P10809_1031
16.4
P10809_1050
22.2
P10809_1069
20.7
P10809_1087
42.4
P10809_1110
21.5
T-reg nTPM: 22.7
Samples: 6
Max nTPM: 28.3
Min nTPM: 12.1
P10809_1018
26.1
P10809_1037
28.0
P10809_1056
12.1
P10809_1075
24.9
P10809_1094
16.8
P10809_1106
28.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
222.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 160.0
Samples: 4
Max nTPM: 207.8
Min nTPM: 101.2
RHH5202_R3573
188.8
RHH5230_R3602
207.8
RHH5259_R3631
101.2
RHH5288_R3660
142.2
Effector memory CD8 T-cell nTPM: 138.6
Samples: 4
Max nTPM: 203.4
Min nTPM: 96.9
RHH5203_R3574
151.0
RHH5231_R3603
102.9
RHH5260_R3632
96.9
RHH5289_R3661
203.4
MAIT T-cell nTPM: 222.6
Samples: 4
Max nTPM: 289.7
Min nTPM: 176.5
RHH5233_R3605
214.5
RHH5205_R3576
289.7
RHH5262_R3634
209.6
RHH5297_R3663
176.5
Memory CD4 T-cell TFH nTPM: 129.4
Samples: 4
Max nTPM: 179.7
Min nTPM: 95.9
RHH5300_R3666
98.0
RHH5236_R3608
143.8
RHH5265_R3637
95.9
RHH5208_R3579
179.7
Memory CD4 T-cell Th1 nTPM: 109.6
Samples: 4
Max nTPM: 144.1
Min nTPM: 78.8
RHH5210_R3581
144.1
RHH5302_R3668
114.1
RHH5238_R3610
78.8
RHH5267_R3639
101.2
Memory CD4 T-cell Th1/Th17 nTPM: 173.3
Samples: 4
Max nTPM: 189.8
Min nTPM: 147.3
RHH5303_R3669
189.8
RHH5211_R3582
188.2
RHH5239_R3611
167.7
RHH5268_R3640
147.3
Memory CD4 T-cell Th17 nTPM: 164.8
Samples: 4
Max nTPM: 199.7
Min nTPM: 132.1
RHH5304_R3670
176.4
RHH5212_R3583
151.0
RHH5240_R3612
199.7
RHH5269_R3641
132.1
Memory CD4 T-cell Th2 nTPM: 199.3
Samples: 4
Max nTPM: 262.3
Min nTPM: 156.9
RHH5305_R3671
180.9
RHH5213_R3584
262.3
RHH5241_R3613
197.2
RHH5270_R3642
156.9
Naive CD4 T-cell nTPM: 103.5
Samples: 4
Max nTPM: 152.8
Min nTPM: 81.2
RHH5306_R3672
81.2
RHH5214_R3585
152.8
RHH5242_R3614
91.5
RHH5271_R3643
88.4
Naive CD8 T-cell nTPM: 104.8
Samples: 4
Max nTPM: 161.4
Min nTPM: 69.7
RHH5201_R3572
161.4
RHH5229_R3601
96.4
RHH5258_R3630
69.7
RHH5287_R3659
91.8
Non-Vd2 gdTCR nTPM: 121.2
Samples: 4
Max nTPM: 177.5
Min nTPM: 89.0
RHH5235_R3607
119.7
RHH5264_R3636
98.4
RHH5207_R3578
177.5
RHH5299_R3665
89.0
T-reg nTPM: 124.8
Samples: 4
Max nTPM: 167.6
Min nTPM: 86.1
RHH5301_R3667
86.1
RHH5237_R3609
139.6
RHH5266_R3638
105.9
RHH5209_R3580
167.6
Terminal effector memory CD4 T-cell nTPM: 92.6
Samples: 2
Max nTPM: 100.7
Min nTPM: 84.4
RHH5243_R3615
84.4
RHH5272_R3644
100.7
Terminal effector memory CD8 T-cell nTPM: 102.8
Samples: 4
Max nTPM: 121.3
Min nTPM: 89.3
RHH5232_R3604
89.3
RHH5204_R3575
103.9
RHH5261_R3633
96.7
RHH5296_R3662
121.3
Vd2 gdTCR nTPM: 150.9
Samples: 4
Max nTPM: 174.7
Min nTPM: 129.7
RHH5234_R3606
150.7
RHH5206_R3577
174.7
RHH5263_R3635
148.3
RHH5298_R3664
129.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
