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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
20.4
nTPM
HPA Brain:
36.5
nTPM
GTEx:
20.4
nTPM
FANTOM5:
91.8
Scaled Tags Per Million
Pig:
52.3
nTPM
Mouse:
72.8
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA006018
Glial cells
High
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
36.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 31.8
1855
Male, age 76, left hemisphere
37.0
1898
Male, age 80, left hemisphere
34.4
1911
Female, age 85, right hemisphere
31.9
2621
Female, age 67, right hemisphere
31.0
2529
Female, age 94, left hemisphere
30.3
2148
Female, age 91, left hemisphere
26.2
Dentate gyrus nTPM: 30.1
2010
Male, age 76, both hemispheres
38.3
2246
Female, age 85, both hemispheres
30.7
1927
Female, age 91, both hemispheres
30.1
2530
Female, age 94, left hemisphere
28.0
2528
Male, age 74, both hemispheres
27.2
2531
Female, age 67, both hemispheres
26.5
Entorhinal gyrus nTPM: 25.4
2117
Female, age 91, right hemisphere
30.0
1938
Female, age 85, left hemisphere
27.7
1787
Male, age 76, left hemisphere
26.1
2764
Male, age 80, right hemisphere
23.4
2613
Female, age 94, left hemisphere
23.1
2686
Male, age 75, right hemisphere
22.4
Hippocampus, CA1 nTPM: 34.1
2749
Male, age 80, left hemisphere
47.3
2045
Male, age 76, both hemispheres
36.4
1873
Female, age 85, both hemispheres
32.8
2527
Male, age 74, both hemispheres
30.3
2082
Female, age 91, right hemisphere
24.0
Hippocampus, CA2 nTPM: 29.7
1892
Male, age 76, both hemispheres
38.7
2249
Male, age 74, both hemispheres
31.3
1963
Male, age 80, left hemisphere
30.3
1940
Female, age 85, left hemisphere
27.8
2113
Female, age 91, right hemisphere
25.9
2437
Female, age 94, left hemisphere
24.2
Hippocampus, CA3 nTPM: 36.5
2137
Male, age 80, left hemisphere
49.0
1867
Male, age 76, both hemispheres
47.1
2436
Male, age 74, both hemispheres
38.9
1891
Female, age 85, both hemispheres
32.1
2620
Female, age 94, left hemisphere
27.6
2861
Female, age 67, both hemispheres
24.5
Parahippocampal cortex nTPM: 27.8
2018
Male, age 76, both hemispheres
36.7
2250
Female, age 67, right hemisphere
30.5
1850
Male, age 80, both hemispheres
29.3
2532
Female, age 72, left hemisphere
27.2
2245
Female, age 91, both hemispheres
27.1
2692
Male, age 74, both hemispheres
26.9
2693
Female, age 94, both hemispheres
26.5
1933
Female, age 85, both hemispheres
26.2
1990
Female, age 91, right hemisphere
26.1
2622
Female, age 67, right hemisphere
21.3
Perirhinal gyrus nTPM: 27.7
1841
Female, age 85, right hemisphere
30.8
1847
Female, age 91, left hemisphere
28.1
2521
Female, age 94, right hemisphere
27.9
1794
Male, age 80, right hemisphere
25.8
2848
Male, age 76, right hemisphere
25.7
Subiculum nTPM: 32.8
2042
Male, age 76, both hemispheres
45.3
1901
Male, age 80, both hemispheres
36.3
2438
Female, age 94, left hemisphere
31.8
1977
Female, age 85, both hemispheres
30.4
2729
Female, age 91, right hemisphere
27.7
2619
Male, age 74, both hemispheres
25.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
20.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 20.4
Samples: 197
Max nTPM: 45.1
Min nTPM: 12.9
Std nTPM: 4.2
Median nTPM: 19.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
45.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
34.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
31.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
30.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
30.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
29.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
28.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
28.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
28.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
28.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
27.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
27.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
27.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
27.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
26.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
26.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
26.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
25.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
25.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
25.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
25.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
25.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
25.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
25.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
24.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
24.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
24.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
24.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
24.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
24.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
24.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
24.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
23.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
23.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
23.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
23.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
23.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
23.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
23.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
23.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
23.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
23.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
23.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
23.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
23.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
23.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
23.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
22.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
22.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
22.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
22.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
22.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
22.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
22.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
22.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
22.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
22.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
22.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
22.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
21.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
21.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
21.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
21.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
21.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
21.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
21.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
21.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
21.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
21.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
21.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
21.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
21.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
21.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
20.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
20.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
20.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
20.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
20.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
20.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
20.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
20.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
20.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
20.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
20.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
20.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
20.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
20.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
20.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
20.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
20.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
20.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
20.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
20.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
20.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
19.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
19.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
19.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
19.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
19.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
19.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
19.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
19.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
19.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
19.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
19.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
19.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
19.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
19.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
19.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
19.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
19.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
19.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
19.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
19.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
19.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
19.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
19.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
18.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
18.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
18.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
18.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
18.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
18.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
18.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
18.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
18.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
18.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
18.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
18.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
18.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
18.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
18.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
18.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
18.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
18.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
18.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
18.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
17.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
17.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
17.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
17.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
17.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
17.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
17.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
17.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
17.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
17.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
17.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
17.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
17.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
17.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
17.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
17.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
17.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
17.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
17.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
17.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
17.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
16.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
16.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
16.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
16.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
16.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
16.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
16.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
16.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
16.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
16.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
16.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
16.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
16.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
16.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
16.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
16.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
15.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
15.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
15.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
15.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
15.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
15.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
15.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
15.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
15.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
15.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
15.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
15.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
14.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
14.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
14.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
14.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
14.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
14.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
14.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
14.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
14.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
13.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
12.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.