MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:35.5 nTPM
GTEx:21.6 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:76.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.6
1870 Female, age 42, unknown 38.7
2666 Male, age 74, left hemisphere 37.4
2019 Male, age 18, unknown 34.1
1833 Male, age 53, unknown 31.3
2586 Male, age 75, left hemisphere 30.0
1830 Male, age 51, unknown 28.6
2411 Female, age 72, unknown 28.4
1827 Male, age 72, unknown 27.2
2828 Female, age 72, unknown 26.8
2219 Male, age 76, both hemispheres 23.2
Dorsal raphe nucleus
nTPM: 31.6
2016 Female, age 72, unknown 36.3
1828 Male, age 53, unknown 32.8
2298 Female, age 72, unknown 30.1
2750 Male, age 76, both hemispheres 29.6
2047 Male, age 72, unknown 29.0
Inferior colliculus
nTPM: 30.3
1890 Male, age 53, unknown 32.7
1848 Female, age 42, unknown 30.2
2097 Female, age 72, unknown 30.2
2849 Male, age 72, unknown 27.9
Median raphe nucleus
nTPM: 31.1
2220 Male, age 76, midline 31.1
Periaquaductal grey, anterior
nTPM: 29.8
2502 Female, age 75, unknown 33.3
1947 Male, age 18, unknown 29.3
1795 Male, age 51, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 33.3
2850 Male, age 76, both hemispheres 44.4
1831 Male, age 72, unknown 31.3
1840 Male, age 53, unknown 28.7
2464 Female, age 72, unknown 28.7
Periaquaductal grey, lateral
nTPM: 30.1
2140 Male, age 76, both hemispheres 34.3
2053 Male, age 18, unknown 29.1
2272 Male, age 74, both hemispheres 26.9
Pretectal area
nTPM: 29.7
1817 Female, age 42, unknown 39.1
1815 Male, age 53, unknown 34.1
2007 Male, age 72, unknown 32.7
1944 Female, age 72, unknown 31.1
2224 Female, age 72, unknown 29.4
2273 Male, age 74, both hemispheres 28.7
1816 Male, age 51, unknown 28.6
2825 Male, age 18, unknown 27.2
2316 Male, age 76, right hemisphere 25.7
2667 Female, age 75, unknown 25.6
2407 Male, age 75, both hemispheres 24.8
Red nucleus
nTPM: 35.5
1865 Male, age 51, unknown 43.5
1904 Male, age 53, unknown 42.8
1821 Female, age 72, unknown 42.2
1954 Female, age 42, unknown 39.8
2227 Male, age 72, unknown 37.3
2785 Male, age 18, unknown 36.0
2725 Female, age 75, unknown 35.4
2769 Male, age 72, unknown 32.4
2503 Female, age 72, unknown 31.0
2823 Male, age 76, right hemisphere 29.9
2588 Male, age 74, left hemisphere 28.7
2584 Male, age 75, left hemisphere 27.0
Substantia nigra
nTPM: 33.3
2699 Male, age 18, unknown 37.7
2409 Female, age 72, unknown 37.2
1851 Male, age 51, unknown 34.8
1916 Female, age 42, unknown 34.7
2241 Male, age 72, unknown 34.6
1889 Female, age 72, unknown 33.0
2590 Female, age 75, unknown 32.0
2665 Male, age 74, both hemispheres 31.3
2583 Male, age 75, right hemisphere 29.4
1941 Male, age 53, unknown 28.7
Superior colliculus
nTPM: 30.2
1913 Female, age 42, unknown 37.8
1995 Male, age 72, unknown 36.1
2587 Male, age 74, left hemisphere 32.6
1839 Male, age 51, unknown 31.7
2668 Female, age 75, unknown 31.6
2087 Female, age 72, unknown 28.2
1895 Male, age 76, right hemisphere 27.9
2261 Male, age 18, unknown 25.7
1796 Male, age 53, unknown 25.6
2664 Male, age 75, both hemispheres 24.9
Ventral tegmental area
nTPM: 32.2
2223 Female, age 72, unknown 35.1
2410 Female, age 72, unknown 35.1
1915 Female, age 42, unknown 34.7
2218 Male, age 76, both hemispheres 30.4
2021 Male, age 53, unknown 29.8
1942 Male, age 51, unknown 28.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 139

Max nTPM: 38.3
Min nTPM: 11.4
Std nTPM: 4.6
Median nTPM: 20.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 38.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 38.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 32.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 32.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 31.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 30.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 30.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 29.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 29.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 29.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.2
Samples: 4

Max nTPM: 65.6
Min nTPM: 54.2
Sample A Female 59.5
Sample B Female 65.6
Sample C Male 57.5
Sample D Male 54.2
Midbrain
nTPM: 53.8
Samples: 4

Max nTPM: 70.3
Min nTPM: 46.2
Sample A Female 70.3
Sample B Female 46.2
Sample C Male 50.6
Sample D Male 48.0
Periaqueductal gray
nTPM: 50.4
Samples: 3

Max nTPM: 55.5
Min nTPM: 47.0
Sample B Female 48.7
Sample C Male 55.5
Sample D Male 47.0
Superior colliculi
nTPM: 58.9
Samples: 4

Max nTPM: 75.1
Min nTPM: 49.7
Sample A Female 59.4
Sample B Female 75.1
Sample C Male 51.2
Sample D Male 49.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.3
Samples: 4

Max nTPM: 78.7
Min nTPM: 72.1
Sample A Male 72.1
Sample B Male 76.2
Sample C Female 78.3
Sample D Female 78.7

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