HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		12.463
RNA expressioni
Consensus:35.7 nTPM
HPA Brain:20.2 nTPM
GTEx:35.7 nTPM
FANTOM5:35.3 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:21.6 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031550Antibody HPA031551Antibody HPA031552
Glial cells Not detectedLowLow
Neuronal cells LowMediumMedium







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA031550
Hippocampal formation mean intensity 12.463
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 4.243
Molecular layer of the dentate gyrus 6.378
Granular dentate gyrus 7.123
CA1 - oriens layer 3.246
CA1 - pyramidal layer 4.245
CA1 - radiatum layer 3.062
CA2 - oriens layer 4.861
CA2 - pyramidal layer 7.022
CA2 - radiatum layer 4.491
CA3 - oriens layer 4.305
CA3 - pyramidal layer 6.007
CA3 - radiatum layer 3.804
Stratum lucidum 6.225
Lacunosum moleculare 7.819
Subiculum 2.504

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Hippocampus
nTPM: 16.0
1898 Male, age 80, left hemisphere 22.7
1855 Male, age 76, left hemisphere 16.5
2621 Female, age 67, right hemisphere 16.4
1911 Female, age 85, right hemisphere 14.6
2529 Female, age 94, left hemisphere 14.1
2148 Female, age 91, left hemisphere 11.8
Dentate gyrus
nTPM: 15.0
2530 Female, age 94, left hemisphere 20.0
2010 Male, age 76, both hemispheres 19.2
1927 Female, age 91, both hemispheres 15.9
2246 Female, age 85, both hemispheres 13.9
2528 Male, age 74, both hemispheres 11.8
2531 Female, age 67, both hemispheres 9.1
Entorhinal gyrus
nTPM: 16.0
2764 Male, age 80, right hemisphere 22.9
1938 Female, age 85, left hemisphere 18.4
1787 Male, age 76, left hemisphere 15.9
2686 Male, age 75, right hemisphere 14.0
2613 Female, age 94, left hemisphere 12.9
2117 Female, age 91, right hemisphere 11.9
Hippocampus, CA1
nTPM: 17.9
2749 Male, age 80, left hemisphere 25.5
1873 Female, age 85, both hemispheres 20.8
2045 Male, age 76, both hemispheres 16.9
2527 Male, age 74, both hemispheres 14.9
2082 Female, age 91, right hemisphere 11.5
Hippocampus, CA2
nTPM: 15.6
1892 Male, age 76, both hemispheres 20.0
1963 Male, age 80, left hemisphere 17.8
2437 Female, age 94, left hemisphere 17.4
1940 Female, age 85, left hemisphere 14.4
2249 Male, age 74, both hemispheres 13.3
2113 Female, age 91, right hemisphere 10.7
Hippocampus, CA3
nTPM: 15.2
1867 Male, age 76, both hemispheres 18.9
2436 Male, age 74, both hemispheres 17.1
2137 Male, age 80, left hemisphere 15.9
1891 Female, age 85, both hemispheres 14.8
2620 Female, age 94, left hemisphere 13.4
2861 Female, age 67, both hemispheres 11.1
Parahippocampal cortex
nTPM: 15.9
1850 Male, age 80, both hemispheres 26.9
2245 Female, age 91, both hemispheres 18.5
1933 Female, age 85, both hemispheres 17.3
2018 Male, age 76, both hemispheres 16.4
1990 Female, age 91, right hemisphere 15.6
2693 Female, age 94, both hemispheres 15.5
2532 Female, age 72, left hemisphere 14.4
2250 Female, age 67, right hemisphere 13.1
2622 Female, age 67, right hemisphere 11.3
2692 Male, age 74, both hemispheres 9.8
Perirhinal gyrus
nTPM: 20.2
1841 Female, age 85, right hemisphere 24.5
1847 Female, age 91, left hemisphere 23.7
1794 Male, age 80, right hemisphere 20.4
2521 Female, age 94, right hemisphere 16.5
2848 Male, age 76, right hemisphere 15.8
Subiculum
nTPM: 14.9
1901 Male, age 80, both hemispheres 18.8
2438 Female, age 94, left hemisphere 17.5
1977 Female, age 85, both hemispheres 15.6
2042 Male, age 76, both hemispheres 13.9
2619 Male, age 74, both hemispheres 13.0
2729 Female, age 91, right hemisphere 10.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.7
Samples: 197

Max nTPM: 76.2
Min nTPM: 15.9
Std nTPM: 12.4
Median nTPM: 34.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 76.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 73.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 69.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 69.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 67.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 65.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 61.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 59.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 59.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 58.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 58.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.3
FF:10169-103B7 60 years, female 45.6
FF:10153-102I9 76 years, female 24.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.0
Pig sample Sample description nTPM
Subiculum
nTPM: 16.6
Samples: 4

Max nTPM: 20.3
Min nTPM: 13.9
Sample A Female 20.3
Sample B Female 13.9
Sample C Male 15.0
Sample D Male 17.1
Dorsal hippocampus
nTPM: 19.0
Samples: 4

Max nTPM: 24.6
Min nTPM: 15.7
Sample A Female 24.6
Sample B Female 17.1
Sample C Male 18.6
Sample D Male 15.7
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 22.3
Min nTPM: 16.1
Sample A Female 18.3
Sample B Female 22.3
Sample C Male 18.1
Sample D Male 16.1
Ventral hippocampus
nTPM: 16.4
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.4
Sample A Female 18.4
Sample B Female 13.4
Sample C Male 16.4
Sample D Male 17.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.6
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.9
Sample A Male 17.9
Sample B Male 20.3
Sample C Female 20.5
Sample D Female 19.8
Hippocampal formation
nTPM: 21.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.4
Sample A Male 23.6
Sample B Male 19.4
Sample C Female 21.6
Sample D Female 22.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
77464914 Antisense, RP_070129_02_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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