MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.6 nTPM
HPA Brain:35.0 nTPM
GTEx:43.6 nTPM
FANTOM5:70.6 Scaled Tags Per Million
Pig:16.3 nTPM
Mouse:14.7 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
1827 Male, age 72, unknown 33.3
2019 Male, age 18, unknown 32.6
2411 Female, age 72, unknown 32.6
1833 Male, age 53, unknown 32.4
1830 Male, age 51, unknown 32.1
1870 Female, age 42, unknown 31.4
2828 Female, age 72, unknown 29.2
2219 Male, age 76, both hemispheres 28.7
2666 Male, age 74, left hemisphere 26.3
2586 Male, age 75, left hemisphere 22.4
Dorsal raphe nucleus
nTPM: 32.8
2298 Female, age 72, unknown 34.7
2016 Female, age 72, unknown 34.5
2750 Male, age 76, both hemispheres 32.1
2047 Male, age 72, unknown 31.7
1828 Male, age 53, unknown 31.1
Inferior colliculus
nTPM: 34.4
2097 Female, age 72, unknown 41.6
1848 Female, age 42, unknown 34.8
1890 Male, age 53, unknown 31.1
2849 Male, age 72, unknown 30.0
Median raphe nucleus
nTPM: 34.9
2220 Male, age 76, midline 34.9
Periaquaductal grey, anterior
nTPM: 33.6
2502 Female, age 75, unknown 38.2
1947 Male, age 18, unknown 33.7
1795 Male, age 51, unknown 28.8
Periaquaductal grey, dorsal
nTPM: 33.4
2464 Female, age 72, unknown 34.8
2850 Male, age 76, both hemispheres 34.2
1831 Male, age 72, unknown 32.3
1840 Male, age 53, unknown 32.2
Periaquaductal grey, lateral
nTPM: 34.8
2272 Male, age 74, both hemispheres 40.5
2140 Male, age 76, both hemispheres 32.2
2053 Male, age 18, unknown 31.7
Pretectal area
nTPM: 33.2
2273 Male, age 74, both hemispheres 39.8
1816 Male, age 51, unknown 37.6
1944 Female, age 72, unknown 36.1
2007 Male, age 72, unknown 34.9
2224 Female, age 72, unknown 34.1
1817 Female, age 42, unknown 34.0
1815 Male, age 53, unknown 33.3
2316 Male, age 76, right hemisphere 30.6
2825 Male, age 18, unknown 30.5
2667 Female, age 75, unknown 30.3
2407 Male, age 75, both hemispheres 24.2
Red nucleus
nTPM: 31.8
1954 Female, age 42, unknown 37.4
1821 Female, age 72, unknown 35.4
1904 Male, age 53, unknown 34.8
1865 Male, age 51, unknown 34.7
2725 Female, age 75, unknown 32.5
2785 Male, age 18, unknown 32.4
2503 Female, age 72, unknown 32.2
2823 Male, age 76, right hemisphere 32.2
2227 Male, age 72, unknown 30.4
2769 Male, age 72, unknown 28.2
2588 Male, age 74, left hemisphere 25.9
2584 Male, age 75, left hemisphere 25.7
Substantia nigra
nTPM: 35.0
2241 Male, age 72, unknown 43.1
2409 Female, age 72, unknown 39.1
2665 Male, age 74, both hemispheres 37.1
1889 Female, age 72, unknown 35.2
1941 Male, age 53, unknown 33.7
2590 Female, age 75, unknown 33.2
2583 Male, age 75, right hemisphere 32.7
1916 Female, age 42, unknown 32.5
1851 Male, age 51, unknown 32.0
2699 Male, age 18, unknown 31.3
Superior colliculus
nTPM: 31.9
2261 Male, age 18, unknown 36.8
2087 Female, age 72, unknown 34.3
1895 Male, age 76, right hemisphere 34.1
1913 Female, age 42, unknown 33.4
1796 Male, age 53, unknown 32.6
2587 Male, age 74, left hemisphere 31.6
1839 Male, age 51, unknown 30.9
1995 Male, age 72, unknown 30.7
2668 Female, age 75, unknown 30.7
2664 Male, age 75, both hemispheres 23.5
Ventral tegmental area
nTPM: 31.7
2410 Female, age 72, unknown 34.8
2218 Male, age 76, both hemispheres 32.8
1915 Female, age 42, unknown 32.0
2021 Male, age 53, unknown 31.5
1942 Male, age 51, unknown 30.5
2223 Female, age 72, unknown 28.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.6
Samples: 139

Max nTPM: 70.7
Min nTPM: 29.5
Std nTPM: 6.7
Median nTPM: 43.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 70.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 64.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 63.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 59.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 55.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 55.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 53.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 53.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 52.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.6
FF:10158-103A5 76 years, female 70.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.3
Samples: 4

Max nTPM: 20.6
Min nTPM: 13.2
Sample A Female 20.6
Sample B Female 16.6
Sample C Male 14.8
Sample D Male 13.2
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 22.3
Min nTPM: 11.5
Sample A Female 22.3
Sample B Female 17.0
Sample C Male 13.2
Sample D Male 11.5
Periaqueductal gray
nTPM: 15.9
Samples: 3

Max nTPM: 16.8
Min nTPM: 14.8
Sample B Female 14.8
Sample C Male 16.8
Sample D Male 16.2
Superior colliculi
nTPM: 15.2
Samples: 4

Max nTPM: 20.2
Min nTPM: 12.2
Sample A Female 15.0
Sample B Female 20.2
Sample C Male 13.3
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.9
Sample A Male 14.9
Sample B Male 14.5
Sample C Female 13.9
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75826638 Antisense, RP_060601_01_C06, Mouse strain C57BL/6J (56 days, male) 0.3

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