MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.6 nTPM
HPA Brain:32.5 nTPM
GTEx:39.6 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:30.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
2219 Male, age 76, both hemispheres 33.1
1833 Male, age 53, unknown 31.9
1830 Male, age 51, unknown 31.3
2019 Male, age 18, unknown 29.7
2411 Female, age 72, unknown 29.7
2828 Female, age 72, unknown 28.1
1827 Male, age 72, unknown 27.1
1870 Female, age 42, unknown 26.8
2666 Male, age 74, left hemisphere 25.4
2586 Male, age 75, left hemisphere 19.7
Dorsal raphe nucleus
nTPM: 29.3
2016 Female, age 72, unknown 30.5
2750 Male, age 76, both hemispheres 30.0
2298 Female, age 72, unknown 29.0
2047 Male, age 72, unknown 28.7
1828 Male, age 53, unknown 28.5
Inferior colliculus
nTPM: 31.1
2849 Male, age 72, unknown 31.8
2097 Female, age 72, unknown 31.7
1890 Male, age 53, unknown 31.2
1848 Female, age 42, unknown 29.7
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 28.6
1795 Male, age 51, unknown 26.8
2502 Female, age 75, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 30.8
2850 Male, age 76, both hemispheres 34.5
2464 Female, age 72, unknown 30.2
1831 Male, age 72, unknown 29.3
1840 Male, age 53, unknown 29.2
Periaquaductal grey, lateral
nTPM: 32.5
2272 Male, age 74, both hemispheres 35.4
2140 Male, age 76, both hemispheres 34.5
2053 Male, age 18, unknown 27.7
Pretectal area
nTPM: 30.8
2273 Male, age 74, both hemispheres 37.3
2667 Female, age 75, unknown 33.8
2316 Male, age 76, right hemisphere 32.7
2224 Female, age 72, unknown 31.7
2825 Male, age 18, unknown 31.4
2407 Male, age 75, both hemispheres 30.9
1944 Female, age 72, unknown 29.8
1816 Male, age 51, unknown 28.7
2007 Male, age 72, unknown 28.1
1815 Male, age 53, unknown 27.3
1817 Female, age 42, unknown 26.9
Red nucleus
nTPM: 29.0
2823 Male, age 76, right hemisphere 33.1
1904 Male, age 53, unknown 30.2
2725 Female, age 75, unknown 29.6
1954 Female, age 42, unknown 29.2
2785 Male, age 18, unknown 29.2
2227 Male, age 72, unknown 29.0
1865 Male, age 51, unknown 28.9
2584 Male, age 75, left hemisphere 28.3
2503 Female, age 72, unknown 28.1
2769 Male, age 72, unknown 27.6
1821 Female, age 72, unknown 27.2
2588 Male, age 74, left hemisphere 27.2
Substantia nigra
nTPM: 29.5
2241 Male, age 72, unknown 38.1
1941 Male, age 53, unknown 31.0
2590 Female, age 75, unknown 30.9
1916 Female, age 42, unknown 30.4
2583 Male, age 75, right hemisphere 30.3
2409 Female, age 72, unknown 29.4
1851 Male, age 51, unknown 27.9
1889 Female, age 72, unknown 27.3
2699 Male, age 18, unknown 26.2
2665 Male, age 74, both hemispheres 23.7
Superior colliculus
nTPM: 28.9
1895 Male, age 76, right hemisphere 33.6
2087 Female, age 72, unknown 32.6
2261 Male, age 18, unknown 31.1
2587 Male, age 74, left hemisphere 30.4
1913 Female, age 42, unknown 27.7
2668 Female, age 75, unknown 27.6
1995 Male, age 72, unknown 27.2
1839 Male, age 51, unknown 26.9
1796 Male, age 53, unknown 26.8
2664 Male, age 75, both hemispheres 24.9
Ventral tegmental area
nTPM: 28.0
1942 Male, age 51, unknown 29.0
2021 Male, age 53, unknown 29.0
2218 Male, age 76, both hemispheres 29.0
2223 Female, age 72, unknown 27.5
1915 Female, age 42, unknown 26.8
2410 Female, age 72, unknown 26.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.6
Samples: 139

Max nTPM: 64.9
Min nTPM: 25.9
Std nTPM: 7.5
Median nTPM: 38.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 64.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 60.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 60.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 53.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 51.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 51.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 50.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 50.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 49.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 15.9
Min nTPM: 6.2
Sample A Female 15.9
Sample B Female 11.6
Sample C Male 11.3
Sample D Male 6.2
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 10.1
Sample C Male 11.1
Sample D Male 10.5
Periaqueductal gray
nTPM: 9.1
Samples: 3

Max nTPM: 9.7
Min nTPM: 8.7
Sample B Female 8.8
Sample C Male 9.7
Sample D Male 8.7
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.2
Sample A Female 11.2
Sample B Female 11.0
Sample C Male 10.8
Sample D Male 8.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 33.0
Min nTPM: 29.0
Sample A Male 33.0
Sample B Male 29.7
Sample C Female 29.0
Sample D Female 29.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org