MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:224.2 nTPM
HPA Brain:231.4 nTPM
GTEx:224.2 nTPM
FANTOM5:181.3 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:46.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 231.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 188.7
2586 Male, age 75, left hemisphere 276.2
2666 Male, age 74, left hemisphere 247.0
1830 Male, age 51, unknown 199.4
2828 Female, age 72, unknown 193.2
1833 Male, age 53, unknown 192.2
1870 Female, age 42, unknown 179.5
2411 Female, age 72, unknown 169.2
2019 Male, age 18, unknown 167.7
1827 Male, age 72, unknown 140.2
2219 Male, age 76, both hemispheres 122.4
Dorsal raphe nucleus
nTPM: 142.6
2750 Male, age 76, both hemispheres 179.3
2016 Female, age 72, unknown 165.5
2047 Male, age 72, unknown 139.2
1828 Male, age 53, unknown 138.9
2298 Female, age 72, unknown 90.1
Inferior colliculus
nTPM: 135.9
2849 Male, age 72, unknown 157.2
1848 Female, age 42, unknown 149.1
1890 Male, age 53, unknown 139.4
2097 Female, age 72, unknown 97.9
Median raphe nucleus
nTPM: 96.1
2220 Male, age 76, midline 96.1
Periaquaductal grey, anterior
nTPM: 144.2
2502 Female, age 75, unknown 160.1
1947 Male, age 18, unknown 152.0
1795 Male, age 51, unknown 120.4
Periaquaductal grey, dorsal
nTPM: 115.4
2464 Female, age 72, unknown 140.7
1831 Male, age 72, unknown 110.5
2850 Male, age 76, both hemispheres 107.2
1840 Male, age 53, unknown 103.3
Periaquaductal grey, lateral
nTPM: 122.0
2053 Male, age 18, unknown 149.5
2272 Male, age 74, both hemispheres 109.6
2140 Male, age 76, both hemispheres 106.9
Pretectal area
nTPM: 127.3
2407 Male, age 75, both hemispheres 155.4
2316 Male, age 76, right hemisphere 155.0
1815 Male, age 53, unknown 152.9
1817 Female, age 42, unknown 152.2
2007 Male, age 72, unknown 142.2
2825 Male, age 18, unknown 142.2
1944 Female, age 72, unknown 104.8
2667 Female, age 75, unknown 104.2
1816 Male, age 51, unknown 103.9
2224 Female, age 72, unknown 96.0
2273 Male, age 74, both hemispheres 91.6
Red nucleus
nTPM: 231.4
2588 Male, age 74, left hemisphere 323.7
1865 Male, age 51, unknown 257.4
1904 Male, age 53, unknown 253.7
2503 Female, age 72, unknown 249.1
2227 Male, age 72, unknown 240.0
2769 Male, age 72, unknown 235.2
1821 Female, age 72, unknown 210.2
1954 Female, age 42, unknown 208.1
2584 Male, age 75, left hemisphere 208.0
2823 Male, age 76, right hemisphere 204.5
2725 Female, age 75, unknown 200.0
2785 Male, age 18, unknown 187.6
Substantia nigra
nTPM: 151.8
2665 Male, age 74, both hemispheres 197.0
2590 Female, age 75, unknown 172.8
2583 Male, age 75, right hemisphere 169.1
1851 Male, age 51, unknown 159.2
2699 Male, age 18, unknown 153.7
1889 Female, age 72, unknown 148.1
2409 Female, age 72, unknown 147.0
1941 Male, age 53, unknown 140.4
1916 Female, age 42, unknown 120.8
2241 Male, age 72, unknown 110.0
Superior colliculus
nTPM: 161.1
1995 Male, age 72, unknown 203.3
2587 Male, age 74, left hemisphere 189.0
2664 Male, age 75, both hemispheres 184.6
1839 Male, age 51, unknown 172.5
2668 Female, age 75, unknown 168.6
1913 Female, age 42, unknown 158.0
1895 Male, age 76, right hemisphere 153.0
2261 Male, age 18, unknown 138.1
1796 Male, age 53, unknown 136.1
2087 Female, age 72, unknown 108.3
Ventral tegmental area
nTPM: 140.2
2410 Female, age 72, unknown 169.5
2223 Female, age 72, unknown 163.8
1942 Male, age 51, unknown 140.2
1915 Female, age 42, unknown 133.1
2021 Male, age 53, unknown 129.2
2218 Male, age 76, both hemispheres 105.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 224.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 224.2
Samples: 139

Max nTPM: 727.1
Min nTPM: 52.3
Std nTPM: 126.2
Median nTPM: 183.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 727.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 685.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 669.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 611.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 485.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 469.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 454.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 451.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 449.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 424.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 419.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 181.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.3
FF:10158-103A5 76 years, female 181.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.1
Samples: 4

Max nTPM: 63.0
Min nTPM: 34.5
Sample A Female 42.8
Sample B Female 34.5
Sample C Male 36.0
Sample D Male 63.0
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 106.3
Min nTPM: 25.6
Sample A Female 106.3
Sample B Female 41.4
Sample C Male 25.6
Sample D Male 29.1
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 32.8
Min nTPM: 26.0
Sample B Female 32.8
Sample C Male 26.0
Sample D Male 30.9
Superior colliculi
nTPM: 37.9
Samples: 4

Max nTPM: 45.1
Min nTPM: 33.3
Sample A Female 38.3
Sample B Female 34.7
Sample C Male 33.3
Sample D Male 45.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 52.7
Min nTPM: 39.8
Sample A Male 52.7
Sample B Male 46.2
Sample C Female 39.8
Sample D Female 46.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69735765 Antisense, RP_050503_03_E03, Mouse strain C57BL/6J (56 days, male) 0.6

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