MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.8 nTPM
HPA Brain:127.4 nTPM
GTEx:60.8 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:99.8 nTPM
Mouse:35.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.7
2586 Male, age 75, left hemisphere 206.8
2828 Female, age 72, unknown 133.8
1870 Female, age 42, unknown 131.1
1830 Male, age 51, unknown 118.5
2411 Female, age 72, unknown 113.7
1833 Male, age 53, unknown 112.3
2666 Male, age 74, left hemisphere 105.6
1827 Male, age 72, unknown 102.6
2219 Male, age 76, both hemispheres 97.8
2019 Male, age 18, unknown 95.3
Dorsal raphe nucleus
nTPM: 118.7
2016 Female, age 72, unknown 130.6
2047 Male, age 72, unknown 126.2
2750 Male, age 76, both hemispheres 122.3
1828 Male, age 53, unknown 117.9
2298 Female, age 72, unknown 96.6
Inferior colliculus
nTPM: 111.9
1848 Female, age 42, unknown 120.7
1890 Male, age 53, unknown 112.0
2849 Male, age 72, unknown 111.4
2097 Female, age 72, unknown 103.5
Median raphe nucleus
nTPM: 103.5
2220 Male, age 76, midline 103.5
Periaquaductal grey, anterior
nTPM: 126.0
2502 Female, age 75, unknown 152.7
1947 Male, age 18, unknown 117.1
1795 Male, age 51, unknown 108.3
Periaquaductal grey, dorsal
nTPM: 115.6
1840 Male, age 53, unknown 146.9
2464 Female, age 72, unknown 113.0
1831 Male, age 72, unknown 102.7
2850 Male, age 76, both hemispheres 100.0
Periaquaductal grey, lateral
nTPM: 111.0
2053 Male, age 18, unknown 140.1
2140 Male, age 76, both hemispheres 108.4
2272 Male, age 74, both hemispheres 84.4
Pretectal area
nTPM: 103.6
2407 Male, age 75, both hemispheres 129.9
2667 Female, age 75, unknown 123.9
2825 Male, age 18, unknown 121.4
1815 Male, age 53, unknown 106.7
1817 Female, age 42, unknown 105.6
2224 Female, age 72, unknown 98.4
2273 Male, age 74, both hemispheres 94.5
1944 Female, age 72, unknown 94.1
1816 Male, age 51, unknown 93.5
2316 Male, age 76, right hemisphere 91.8
2007 Male, age 72, unknown 80.0
Red nucleus
nTPM: 127.4
2769 Male, age 72, unknown 147.1
1865 Male, age 51, unknown 144.3
2227 Male, age 72, unknown 142.4
1954 Female, age 42, unknown 140.5
2584 Male, age 75, left hemisphere 138.9
1904 Male, age 53, unknown 129.0
2588 Male, age 74, left hemisphere 128.9
1821 Female, age 72, unknown 128.8
2503 Female, age 72, unknown 127.1
2823 Male, age 76, right hemisphere 111.8
2725 Female, age 75, unknown 95.7
2785 Male, age 18, unknown 94.4
Substantia nigra
nTPM: 121.2
2699 Male, age 18, unknown 150.6
1851 Male, age 51, unknown 134.6
1916 Female, age 42, unknown 134.1
2665 Male, age 74, both hemispheres 131.5
2583 Male, age 75, right hemisphere 125.9
2241 Male, age 72, unknown 117.0
2590 Female, age 75, unknown 114.7
1889 Female, age 72, unknown 109.6
2409 Female, age 72, unknown 99.6
1941 Male, age 53, unknown 94.5
Superior colliculus
nTPM: 119.9
2664 Male, age 75, both hemispheres 188.4
1995 Male, age 72, unknown 141.4
1913 Female, age 42, unknown 129.9
1839 Male, age 51, unknown 114.9
1796 Male, age 53, unknown 114.4
2668 Female, age 75, unknown 109.3
2261 Male, age 18, unknown 108.3
2587 Male, age 74, left hemisphere 105.8
2087 Female, age 72, unknown 103.6
1895 Male, age 76, right hemisphere 82.7
Ventral tegmental area
nTPM: 122.6
2223 Female, age 72, unknown 148.9
2021 Male, age 53, unknown 122.8
1942 Male, age 51, unknown 122.5
1915 Female, age 42, unknown 118.2
2218 Male, age 76, both hemispheres 112.3
2410 Female, age 72, unknown 110.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.8
Samples: 139

Max nTPM: 168.3
Min nTPM: 8.0
Std nTPM: 25.2
Median nTPM: 55.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 168.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 156.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 152.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 132.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 115.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 114.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 113.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 103.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 100.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 95.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 94.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.0
FF:10158-103A5 76 years, female 101.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 99.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.8
Samples: 4

Max nTPM: 112.3
Min nTPM: 91.8
Sample A Female 102.0
Sample B Female 93.1
Sample C Male 91.8
Sample D Male 112.3
Midbrain
nTPM: 99.0
Samples: 4

Max nTPM: 181.1
Min nTPM: 60.3
Sample A Female 181.1
Sample B Female 72.6
Sample C Male 82.1
Sample D Male 60.3
Periaqueductal gray
nTPM: 63.4
Samples: 3

Max nTPM: 67.6
Min nTPM: 55.2
Sample B Female 67.5
Sample C Male 67.6
Sample D Male 55.2
Superior colliculi
nTPM: 78.8
Samples: 4

Max nTPM: 83.3
Min nTPM: 66.8
Sample A Female 83.3
Sample B Female 66.8
Sample C Male 82.3
Sample D Male 82.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 30.7
Sample A Male 30.7
Sample B Male 37.6
Sample C Female 36.5
Sample D Female 35.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
79756317 Antisense, RP_071204_02_E06, Mouse strain C57BL/6J (56 days, male) 0.6

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