MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.6 nTPM
HPA Brain:25.1 nTPM
GTEx:14.6 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:83.7 nTPM
Mouse:29.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.0
2019 Male, age 18, unknown 24.5
2411 Female, age 72, unknown 23.4
1870 Female, age 42, unknown 22.4
2666 Male, age 74, left hemisphere 21.0
1830 Male, age 51, unknown 20.5
1833 Male, age 53, unknown 19.9
1827 Male, age 72, unknown 18.6
2219 Male, age 76, both hemispheres 17.5
2828 Female, age 72, unknown 17.0
2586 Male, age 75, left hemisphere 15.2
Dorsal raphe nucleus
nTPM: 21.9
2750 Male, age 76, both hemispheres 26.3
2047 Male, age 72, unknown 23.2
1828 Male, age 53, unknown 21.4
2298 Female, age 72, unknown 20.4
2016 Female, age 72, unknown 18.1
Inferior colliculus
nTPM: 17.9
2097 Female, age 72, unknown 19.9
1890 Male, age 53, unknown 18.6
1848 Female, age 42, unknown 18.4
2849 Male, age 72, unknown 14.7
Median raphe nucleus
nTPM: 25.1
2220 Male, age 76, midline 25.1
Periaquaductal grey, anterior
nTPM: 20.8
1947 Male, age 18, unknown 24.4
2502 Female, age 75, unknown 20.1
1795 Male, age 51, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 18.7
2850 Male, age 76, both hemispheres 23.0
2464 Female, age 72, unknown 17.9
1840 Male, age 53, unknown 17.3
1831 Male, age 72, unknown 16.8
Periaquaductal grey, lateral
nTPM: 17.9
2272 Male, age 74, both hemispheres 21.2
2140 Male, age 76, both hemispheres 16.8
2053 Male, age 18, unknown 15.6
Pretectal area
nTPM: 20.3
2007 Male, age 72, unknown 24.5
1817 Female, age 42, unknown 24.1
2667 Female, age 75, unknown 22.5
1944 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 21.0
2273 Male, age 74, both hemispheres 20.8
1815 Male, age 53, unknown 20.4
2224 Female, age 72, unknown 20.3
2407 Male, age 75, both hemispheres 17.4
2316 Male, age 76, right hemisphere 15.6
2825 Male, age 18, unknown 15.6
Red nucleus
nTPM: 21.0
1821 Female, age 72, unknown 25.0
1904 Male, age 53, unknown 23.3
2785 Male, age 18, unknown 23.3
1865 Male, age 51, unknown 22.5
1954 Female, age 42, unknown 21.4
2725 Female, age 75, unknown 20.7
2769 Male, age 72, unknown 20.1
2823 Male, age 76, right hemisphere 19.8
2503 Female, age 72, unknown 19.6
2588 Male, age 74, left hemisphere 19.1
2227 Male, age 72, unknown 18.8
2584 Male, age 75, left hemisphere 18.2
Substantia nigra
nTPM: 22.1
2241 Male, age 72, unknown 26.7
2409 Female, age 72, unknown 25.9
1889 Female, age 72, unknown 25.0
1851 Male, age 51, unknown 24.3
1916 Female, age 42, unknown 23.9
1941 Male, age 53, unknown 23.9
2699 Male, age 18, unknown 20.2
2583 Male, age 75, right hemisphere 17.8
2590 Female, age 75, unknown 16.9
2665 Male, age 74, both hemispheres 16.5
Superior colliculus
nTPM: 18.7
2668 Female, age 75, unknown 22.2
2587 Male, age 74, left hemisphere 20.7
1913 Female, age 42, unknown 19.8
2087 Female, age 72, unknown 19.6
1995 Male, age 72, unknown 19.1
1839 Male, age 51, unknown 18.7
2261 Male, age 18, unknown 18.0
1895 Male, age 76, right hemisphere 17.2
1796 Male, age 53, unknown 16.6
2664 Male, age 75, both hemispheres 15.3
Ventral tegmental area
nTPM: 22.3
2218 Male, age 76, both hemispheres 26.0
2410 Female, age 72, unknown 24.0
1915 Female, age 42, unknown 22.1
2223 Female, age 72, unknown 21.5
2021 Male, age 53, unknown 20.9
1942 Male, age 51, unknown 19.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.6
Samples: 139

Max nTPM: 22.3
Min nTPM: 9.2
Std nTPM: 2.5
Median nTPM: 14.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 21.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 20.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 20.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 18.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 18.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 18.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.5
Samples: 4

Max nTPM: 98.3
Min nTPM: 66.6
Sample A Female 98.3
Sample B Female 66.6
Sample C Male 77.7
Sample D Male 79.5
Midbrain
nTPM: 83.8
Samples: 4

Max nTPM: 106.5
Min nTPM: 71.3
Sample A Female 106.5
Sample B Female 74.1
Sample C Male 83.1
Sample D Male 71.3
Periaqueductal gray
nTPM: 60.5
Samples: 3

Max nTPM: 62.7
Min nTPM: 57.3
Sample B Female 62.7
Sample C Male 61.4
Sample D Male 57.3
Superior colliculi
nTPM: 79.4
Samples: 4

Max nTPM: 96.1
Min nTPM: 57.1
Sample A Female 82.6
Sample B Female 57.1
Sample C Male 96.1
Sample D Male 81.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 31.2
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 29.1
Sample C Female 30.6
Sample D Female 31.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69838513 Antisense, RP_050309_01_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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