MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.1 nTPM
HPA Brain:108.8 nTPM
GTEx:106.1 nTPM
FANTOM5:111.1 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:80.1 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.6
2586 Male, age 75, left hemisphere 179.4
2666 Male, age 74, left hemisphere 146.4
1827 Male, age 72, unknown 111.9
2828 Female, age 72, unknown 107.4
2019 Male, age 18, unknown 107.2
2411 Female, age 72, unknown 94.8
1870 Female, age 42, unknown 86.2
1830 Male, age 51, unknown 85.9
1833 Male, age 53, unknown 83.9
2219 Male, age 76, both hemispheres 73.4
Dorsal raphe nucleus
nTPM: 83.2
1828 Male, age 53, unknown 90.0
2047 Male, age 72, unknown 88.3
2016 Female, age 72, unknown 83.5
2298 Female, age 72, unknown 77.0
2750 Male, age 76, both hemispheres 76.9
Inferior colliculus
nTPM: 87.5
1890 Male, age 53, unknown 96.5
2097 Female, age 72, unknown 89.8
1848 Female, age 42, unknown 83.4
2849 Male, age 72, unknown 80.5
Median raphe nucleus
nTPM: 79.4
2220 Male, age 76, midline 79.4
Periaquaductal grey, anterior
nTPM: 103.4
1795 Male, age 51, unknown 103.9
1947 Male, age 18, unknown 103.7
2502 Female, age 75, unknown 102.7
Periaquaductal grey, dorsal
nTPM: 80.7
1831 Male, age 72, unknown 90.1
2464 Female, age 72, unknown 88.3
1840 Male, age 53, unknown 75.0
2850 Male, age 76, both hemispheres 69.5
Periaquaductal grey, lateral
nTPM: 70.5
2053 Male, age 18, unknown 84.2
2140 Male, age 76, both hemispheres 68.4
2272 Male, age 74, both hemispheres 59.0
Pretectal area
nTPM: 97.9
1816 Male, age 51, unknown 138.6
2007 Male, age 72, unknown 128.2
1817 Female, age 42, unknown 119.1
1815 Male, age 53, unknown 117.9
2407 Male, age 75, both hemispheres 107.2
1944 Female, age 72, unknown 106.3
2825 Male, age 18, unknown 86.3
2316 Male, age 76, right hemisphere 75.6
2667 Female, age 75, unknown 74.6
2224 Female, age 72, unknown 63.3
2273 Male, age 74, both hemispheres 59.3
Red nucleus
nTPM: 106.5
2588 Male, age 74, left hemisphere 153.5
2584 Male, age 75, left hemisphere 125.9
2725 Female, age 75, unknown 117.3
2503 Female, age 72, unknown 108.6
1821 Female, age 72, unknown 108.4
2785 Male, age 18, unknown 102.5
1904 Male, age 53, unknown 100.1
1954 Female, age 42, unknown 97.5
1865 Male, age 51, unknown 95.5
2769 Male, age 72, unknown 92.8
2227 Male, age 72, unknown 92.6
2823 Male, age 76, right hemisphere 83.7
Substantia nigra
nTPM: 108.8
2665 Male, age 74, both hemispheres 134.4
2583 Male, age 75, right hemisphere 129.9
1851 Male, age 51, unknown 113.9
2590 Female, age 75, unknown 110.2
1916 Female, age 42, unknown 106.7
1889 Female, age 72, unknown 106.1
1941 Male, age 53, unknown 101.6
2409 Female, age 72, unknown 101.3
2241 Male, age 72, unknown 98.8
2699 Male, age 18, unknown 85.0
Superior colliculus
nTPM: 101.4
2664 Male, age 75, both hemispheres 138.9
2261 Male, age 18, unknown 114.3
2668 Female, age 75, unknown 111.9
2087 Female, age 72, unknown 103.9
1796 Male, age 53, unknown 102.6
2587 Male, age 74, left hemisphere 98.0
1913 Female, age 42, unknown 89.0
1995 Male, age 72, unknown 87.3
1839 Male, age 51, unknown 87.0
1895 Male, age 76, right hemisphere 81.2
Ventral tegmental area
nTPM: 90.1
2410 Female, age 72, unknown 100.3
1915 Female, age 42, unknown 96.2
1942 Male, age 51, unknown 88.4
2021 Male, age 53, unknown 86.6
2218 Male, age 76, both hemispheres 86.0
2223 Female, age 72, unknown 83.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.1
Samples: 139

Max nTPM: 213.2
Min nTPM: 47.7
Std nTPM: 35.8
Median nTPM: 93.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 213.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 202.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 200.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 200.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 195.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 184.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 184.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 179.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 174.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 173.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 172.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.1
FF:10158-103A5 76 years, female 111.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 26.0
Min nTPM: 21.1
Sample A Female 22.6
Sample B Female 21.1
Sample C Male 23.9
Sample D Male 26.0
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 32.2
Min nTPM: 23.5
Sample A Female 23.5
Sample B Female 26.9
Sample C Male 32.2
Sample D Male 29.3
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 24.5
Min nTPM: 20.9
Sample B Female 24.5
Sample C Male 20.9
Sample D Male 21.2
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 31.9
Min nTPM: 22.3
Sample A Female 25.0
Sample B Female 22.3
Sample C Male 31.9
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 80.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.1
Samples: 4

Max nTPM: 85.1
Min nTPM: 77.1
Sample A Male 79.1
Sample B Male 77.1
Sample C Female 85.1
Sample D Female 79.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
67765710 Antisense, RP_040916_01_E03, Mouse strain C57BL/6J (56 days, male) 4.2

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