HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:24.5 nTPM
HPA Brain:20.7 nTPM
GTEx:24.5 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:8.7 nTPM
Mouse:39.0 nTPM
Allen mouse:9.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041953
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Hippocampus
nTPM: 16.4
1898 Male, age 80, left hemisphere 21.7
2529 Female, age 94, left hemisphere 17.4
2621 Female, age 67, right hemisphere 17.2
2148 Female, age 91, left hemisphere 16.2
1911 Female, age 85, right hemisphere 15.1
1855 Male, age 76, left hemisphere 11.1
Dentate gyrus
nTPM: 17.3
2530 Female, age 94, left hemisphere 23.8
2010 Male, age 76, both hemispheres 17.7
2531 Female, age 67, both hemispheres 16.8
1927 Female, age 91, both hemispheres 16.1
2528 Male, age 74, both hemispheres 15.8
2246 Female, age 85, both hemispheres 13.5
Entorhinal gyrus
nTPM: 20.7
2764 Male, age 80, right hemisphere 26.2
2117 Female, age 91, right hemisphere 22.5
2686 Male, age 75, right hemisphere 20.5
2613 Female, age 94, left hemisphere 20.4
1938 Female, age 85, left hemisphere 18.2
1787 Male, age 76, left hemisphere 16.3
Hippocampus, CA1
nTPM: 16.6
2749 Male, age 80, left hemisphere 24.3
1873 Female, age 85, both hemispheres 17.3
2082 Female, age 91, right hemisphere 15.4
2527 Male, age 74, both hemispheres 14.5
2045 Male, age 76, both hemispheres 11.4
Hippocampus, CA2
nTPM: 18.5
1963 Male, age 80, left hemisphere 25.5
2437 Female, age 94, left hemisphere 19.7
1892 Male, age 76, both hemispheres 19.0
1940 Female, age 85, left hemisphere 17.0
2113 Female, age 91, right hemisphere 15.1
2249 Male, age 74, both hemispheres 14.5
Hippocampus, CA3
nTPM: 16.3
1867 Male, age 76, both hemispheres 18.3
1891 Female, age 85, both hemispheres 18.3
2137 Male, age 80, left hemisphere 17.7
2861 Female, age 67, both hemispheres 16.6
2620 Female, age 94, left hemisphere 16.1
2436 Male, age 74, both hemispheres 10.9
Parahippocampal cortex
nTPM: 16.2
1990 Female, age 91, right hemisphere 19.8
1933 Female, age 85, both hemispheres 18.9
1850 Male, age 80, both hemispheres 17.9
2692 Male, age 74, both hemispheres 17.5
2018 Male, age 76, both hemispheres 16.7
2245 Female, age 91, both hemispheres 16.6
2532 Female, age 72, left hemisphere 15.1
2693 Female, age 94, both hemispheres 14.3
2250 Female, age 67, right hemisphere 13.6
2622 Female, age 67, right hemisphere 11.9
Perirhinal gyrus
nTPM: 15.6
1794 Male, age 80, right hemisphere 19.1
1847 Female, age 91, left hemisphere 17.7
1841 Female, age 85, right hemisphere 14.1
2521 Female, age 94, right hemisphere 13.7
2848 Male, age 76, right hemisphere 13.4
Subiculum
nTPM: 18.4
1977 Female, age 85, both hemispheres 22.6
1901 Male, age 80, both hemispheres 21.6
2042 Male, age 76, both hemispheres 19.5
2438 Female, age 94, left hemisphere 16.1
2619 Male, age 74, both hemispheres 15.4
2729 Female, age 91, right hemisphere 14.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.5
Samples: 197

Max nTPM: 57.1
Min nTPM: 7.2
Std nTPM: 8.1
Median nTPM: 24.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 57.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 53.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 48.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 46.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 46.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 41.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 39.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 39.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 38.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 38.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.2
FF:10153-102I9 76 years, female 10.1
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.7
Pig sample Sample description nTPM
Subiculum
nTPM: 7.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 5.0
Sample A Female 10.8
Sample B Female 6.1
Sample C Male 6.8
Sample D Male 5.0
Dorsal hippocampus
nTPM: 8.6
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.0
Sample A Female 11.2
Sample B Female 9.0
Sample C Male 7.0
Sample D Male 7.3
Entorhinal cortex
nTPM: 7.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.3
Sample A Female 7.9
Sample B Female 8.2
Sample C Male 7.6
Sample D Male 6.3
Ventral hippocampus
nTPM: 8.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 5.6
Sample A Female 9.5
Sample B Female 5.6
Sample C Male 11.6
Sample D Male 8.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 39.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.1
Samples: 4

Max nTPM: 46.8
Min nTPM: 32.8
Sample A Male 41.4
Sample B Male 46.8
Sample C Female 35.2
Sample D Female 32.8
Hippocampal formation
nTPM: 31.4
Samples: 4

Max nTPM: 36.8
Min nTPM: 26.8
Sample A Male 30.5
Sample B Male 31.4
Sample C Female 26.8
Sample D Female 36.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.6
413812 Antisense, RP_040809_01_F08, Mouse strain C57BL/6J (56 days, male) 9.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org