MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.3 nTPM
HPA Brain:75.1 nTPM
GTEx:54.3 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:91.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.1
2586 Male, age 75, left hemisphere 102.1
2411 Female, age 72, unknown 95.1
2019 Male, age 18, unknown 85.1
1827 Male, age 72, unknown 75.8
1870 Female, age 42, unknown 73.7
1833 Male, age 53, unknown 72.6
1830 Male, age 51, unknown 70.3
2666 Male, age 74, left hemisphere 60.9
2828 Female, age 72, unknown 59.6
2219 Male, age 76, both hemispheres 56.0
Dorsal raphe nucleus
nTPM: 69.5
2047 Male, age 72, unknown 89.9
2016 Female, age 72, unknown 78.2
1828 Male, age 53, unknown 65.5
2298 Female, age 72, unknown 60.3
2750 Male, age 76, both hemispheres 53.5
Inferior colliculus
nTPM: 61.9
1848 Female, age 42, unknown 66.5
1890 Male, age 53, unknown 66.5
2849 Male, age 72, unknown 62.5
2097 Female, age 72, unknown 52.2
Median raphe nucleus
nTPM: 60.0
2220 Male, age 76, midline 60.0
Periaquaductal grey, anterior
nTPM: 74.5
1947 Male, age 18, unknown 86.6
2502 Female, age 75, unknown 71.8
1795 Male, age 51, unknown 65.3
Periaquaductal grey, dorsal
nTPM: 66.2
1840 Male, age 53, unknown 71.9
1831 Male, age 72, unknown 68.4
2850 Male, age 76, both hemispheres 66.7
2464 Female, age 72, unknown 58.0
Periaquaductal grey, lateral
nTPM: 70.5
2053 Male, age 18, unknown 90.6
2272 Male, age 74, both hemispheres 62.8
2140 Male, age 76, both hemispheres 58.3
Pretectal area
nTPM: 66.0
2007 Male, age 72, unknown 92.2
1944 Female, age 72, unknown 75.3
1817 Female, age 42, unknown 67.4
2407 Male, age 75, both hemispheres 66.0
2825 Male, age 18, unknown 65.5
2667 Female, age 75, unknown 65.1
1816 Male, age 51, unknown 64.1
2224 Female, age 72, unknown 59.6
2273 Male, age 74, both hemispheres 58.2
1815 Male, age 53, unknown 57.9
2316 Male, age 76, right hemisphere 55.0
Red nucleus
nTPM: 66.6
2588 Male, age 74, left hemisphere 84.5
1821 Female, age 72, unknown 79.8
1865 Male, age 51, unknown 77.7
1904 Male, age 53, unknown 74.4
2584 Male, age 75, left hemisphere 73.6
1954 Female, age 42, unknown 71.7
2503 Female, age 72, unknown 62.5
2785 Male, age 18, unknown 57.4
2725 Female, age 75, unknown 55.7
2769 Male, age 72, unknown 55.6
2823 Male, age 76, right hemisphere 54.7
2227 Male, age 72, unknown 51.9
Substantia nigra
nTPM: 68.6
2590 Female, age 75, unknown 87.9
2409 Female, age 72, unknown 81.7
1889 Female, age 72, unknown 78.1
1916 Female, age 42, unknown 75.5
2583 Male, age 75, right hemisphere 74.6
1851 Male, age 51, unknown 70.4
1941 Male, age 53, unknown 65.5
2699 Male, age 18, unknown 56.2
2665 Male, age 74, both hemispheres 54.7
2241 Male, age 72, unknown 41.7
Superior colliculus
nTPM: 68.4
2587 Male, age 74, left hemisphere 90.8
1995 Male, age 72, unknown 81.1
1913 Female, age 42, unknown 75.2
1895 Male, age 76, right hemisphere 70.3
1796 Male, age 53, unknown 68.9
2664 Male, age 75, both hemispheres 67.0
1839 Male, age 51, unknown 64.3
2668 Female, age 75, unknown 63.0
2261 Male, age 18, unknown 52.2
2087 Female, age 72, unknown 51.7
Ventral tegmental area
nTPM: 70.3
2410 Female, age 72, unknown 99.0
1915 Female, age 42, unknown 80.0
1942 Male, age 51, unknown 70.7
2021 Male, age 53, unknown 62.2
2218 Male, age 76, both hemispheres 54.9
2223 Female, age 72, unknown 54.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.3
Samples: 139

Max nTPM: 86.1
Min nTPM: 32.3
Std nTPM: 9.8
Median nTPM: 53.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 86.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 77.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 74.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 72.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 72.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 72.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 72.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 72.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 72.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 72.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.1
FF:10158-103A5 76 years, female 36.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.9
Samples: 4

Max nTPM: 44.9
Min nTPM: 27.3
Sample A Female 44.9
Sample B Female 29.9
Sample C Male 33.4
Sample D Male 27.3
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 44.2
Min nTPM: 34.7
Sample A Female 44.2
Sample B Female 34.7
Sample C Male 35.1
Sample D Male 42.7
Periaqueductal gray
nTPM: 39.5
Samples: 3

Max nTPM: 44.5
Min nTPM: 36.4
Sample B Female 36.4
Sample C Male 44.5
Sample D Male 37.6
Superior colliculi
nTPM: 41.7
Samples: 4

Max nTPM: 52.7
Min nTPM: 37.7
Sample A Female 52.7
Sample B Female 38.2
Sample C Male 38.3
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.4
Samples: 4

Max nTPM: 100.1
Min nTPM: 82.2
Sample A Male 100.1
Sample B Male 85.5
Sample C Female 82.2
Sample D Female 97.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67815555 Antisense, RP_040920_02_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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