HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.6 nTPM
HPA Brain:107.0 nTPM
GTEx:39.6 nTPM
FANTOM5:290.9 Scaled Tags Per Million
Mouse:41.8 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 107.0
Sample id Sample description nTPM
Hippocampus
nTPM: 107.0
2529 Female, age 94, left hemisphere 119.5
2148 Female, age 91, left hemisphere 119.3
2621 Female, age 67, right hemisphere 115.8
1911 Female, age 85, right hemisphere 106.6
1898 Male, age 80, left hemisphere 97.7
1855 Male, age 76, left hemisphere 83.0
Dentate gyrus
nTPM: 95.7
2528 Male, age 74, both hemispheres 120.9
2530 Female, age 94, left hemisphere 108.9
2531 Female, age 67, both hemispheres 97.4
2010 Male, age 76, both hemispheres 84.6
2246 Female, age 85, both hemispheres 82.4
1927 Female, age 91, both hemispheres 80.1
Entorhinal gyrus
nTPM: 83.2
2117 Female, age 91, right hemisphere 125.1
2686 Male, age 75, right hemisphere 86.8
2613 Female, age 94, left hemisphere 76.0
2764 Male, age 80, right hemisphere 75.9
1787 Male, age 76, left hemisphere 68.1
1938 Female, age 85, left hemisphere 67.2
Hippocampus, CA1
nTPM: 78.9
1873 Female, age 85, both hemispheres 107.2
2527 Male, age 74, both hemispheres 103.2
2749 Male, age 80, left hemisphere 73.1
2045 Male, age 76, both hemispheres 57.0
2082 Female, age 91, right hemisphere 54.2
Hippocampus, CA2
nTPM: 82.7
1963 Male, age 80, left hemisphere 109.6
2249 Male, age 74, both hemispheres 96.6
2437 Female, age 94, left hemisphere 81.4
1940 Female, age 85, left hemisphere 76.5
2113 Female, age 91, right hemisphere 67.9
1892 Male, age 76, both hemispheres 64.0
Hippocampus, CA3
nTPM: 87.4
2861 Female, age 67, both hemispheres 145.0
2620 Female, age 94, left hemisphere 107.3
1891 Female, age 85, both hemispheres 81.7
1867 Male, age 76, both hemispheres 66.6
2137 Male, age 80, left hemisphere 61.9
2436 Male, age 74, both hemispheres 61.8
Parahippocampal cortex
nTPM: 69.7
2622 Female, age 67, right hemisphere 92.1
2692 Male, age 74, both hemispheres 85.7
2245 Female, age 91, both hemispheres 81.1
1990 Female, age 91, right hemisphere 68.5
1933 Female, age 85, both hemispheres 68.3
2250 Female, age 67, right hemisphere 67.8
2532 Female, age 72, left hemisphere 66.1
2018 Male, age 76, both hemispheres 62.3
2693 Female, age 94, both hemispheres 54.8
1850 Male, age 80, both hemispheres 50.2
Perirhinal gyrus
nTPM: 54.1
2521 Female, age 94, right hemisphere 63.5
1794 Male, age 80, right hemisphere 56.9
1847 Female, age 91, left hemisphere 53.5
2848 Male, age 76, right hemisphere 48.7
1841 Female, age 85, right hemisphere 47.6
Subiculum
nTPM: 93.3
2729 Female, age 91, right hemisphere 117.4
2042 Male, age 76, both hemispheres 107.3
2619 Male, age 74, both hemispheres 107.2
1901 Male, age 80, both hemispheres 84.9
1977 Female, age 85, both hemispheres 76.3
2438 Female, age 94, left hemisphere 66.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.6
Samples: 197

Max nTPM: 93.9
Min nTPM: 7.2
Std nTPM: 15.3
Median nTPM: 38.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 93.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 88.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 86.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 81.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 78.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 77.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 74.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 73.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 71.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 71.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 66.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 290.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 290.9
FF:10153-102I9 76 years, female 300.5
FF:10169-103B7 60 years, female 281.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.1
Samples: 4

Max nTPM: 43.1
Min nTPM: 33.2
Sample A Male 33.2
Sample B Male 34.8
Sample C Female 33.4
Sample D Female 43.1
Hippocampal formation
nTPM: 41.8
Samples: 4

Max nTPM: 45.8
Min nTPM: 33.1
Sample A Male 33.1
Sample B Male 43.5
Sample C Female 45.8
Sample D Female 44.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
70565593 Antisense, RP_050628_01_C09, Mouse strain C57BL/6J (56 days, male) 12.1
69736052 Antisense, RP_050503_04_A12, Mouse strain C57BL/6J (56 days, male) 3.2
75081205 Antisense, RP_060315_03_C10, Mouse strain C57BL/6J (56 days, male) 3.1
Hippocampal formation
Expression energy: 6.1
70565593 Antisense, RP_050628_01_C09, Mouse strain C57BL/6J (56 days, male) 12.1
69736052 Antisense, RP_050503_04_A12, Mouse strain C57BL/6J (56 days, male) 3.2
75081205 Antisense, RP_060315_03_C10, Mouse strain C57BL/6J (56 days, male) 3.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org