MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.0 nTPM
HPA Brain:125.1 nTPM
GTEx:42.0 nTPM
FANTOM5:275.4 Scaled Tags Per Million
Mouse:18.7 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.1
2586 Male, age 75, left hemisphere 239.7
2828 Female, age 72, unknown 161.2
2219 Male, age 76, both hemispheres 118.3
1833 Male, age 53, unknown 112.5
1870 Female, age 42, unknown 111.1
2666 Male, age 74, left hemisphere 109.4
1830 Male, age 51, unknown 109.0
2411 Female, age 72, unknown 100.7
1827 Male, age 72, unknown 95.8
2019 Male, age 18, unknown 92.8
Dorsal raphe nucleus
nTPM: 123.0
2750 Male, age 76, both hemispheres 148.7
2016 Female, age 72, unknown 139.5
2047 Male, age 72, unknown 131.4
1828 Male, age 53, unknown 110.0
2298 Female, age 72, unknown 85.5
Inferior colliculus
nTPM: 104.5
2849 Male, age 72, unknown 120.5
1848 Female, age 42, unknown 112.0
1890 Male, age 53, unknown 105.8
2097 Female, age 72, unknown 79.5
Median raphe nucleus
nTPM: 92.6
2220 Male, age 76, midline 92.6
Periaquaductal grey, anterior
nTPM: 120.7
1795 Male, age 51, unknown 125.8
2502 Female, age 75, unknown 124.3
1947 Male, age 18, unknown 112.0
Periaquaductal grey, dorsal
nTPM: 101.4
1840 Male, age 53, unknown 113.8
2464 Female, age 72, unknown 107.9
2850 Male, age 76, both hemispheres 93.7
1831 Male, age 72, unknown 90.3
Periaquaductal grey, lateral
nTPM: 107.7
2053 Male, age 18, unknown 110.4
2140 Male, age 76, both hemispheres 109.9
2272 Male, age 74, both hemispheres 102.8
Pretectal area
nTPM: 105.0
2316 Male, age 76, right hemisphere 115.3
2825 Male, age 18, unknown 114.9
1815 Male, age 53, unknown 109.5
2273 Male, age 74, both hemispheres 109.1
2667 Female, age 75, unknown 107.6
1817 Female, age 42, unknown 103.5
1944 Female, age 72, unknown 103.1
1816 Male, age 51, unknown 100.5
2007 Male, age 72, unknown 100.1
2407 Male, age 75, both hemispheres 99.4
2224 Female, age 72, unknown 92.0
Red nucleus
nTPM: 120.2
2769 Male, age 72, unknown 147.8
2227 Male, age 72, unknown 145.4
2503 Female, age 72, unknown 136.2
2588 Male, age 74, left hemisphere 131.1
2584 Male, age 75, left hemisphere 124.3
1904 Male, age 53, unknown 121.0
2823 Male, age 76, right hemisphere 117.2
2785 Male, age 18, unknown 113.2
1954 Female, age 42, unknown 112.3
1865 Male, age 51, unknown 102.2
1821 Female, age 72, unknown 97.9
2725 Female, age 75, unknown 94.2
Substantia nigra
nTPM: 107.9
2699 Male, age 18, unknown 132.5
1916 Female, age 42, unknown 129.8
2583 Male, age 75, right hemisphere 121.4
1851 Male, age 51, unknown 118.7
2665 Male, age 74, both hemispheres 118.5
2590 Female, age 75, unknown 113.3
1889 Female, age 72, unknown 95.4
1941 Male, age 53, unknown 94.5
2409 Female, age 72, unknown 78.7
2241 Male, age 72, unknown 76.1
Superior colliculus
nTPM: 118.6
2664 Male, age 75, both hemispheres 187.1
2668 Female, age 75, unknown 129.4
1995 Male, age 72, unknown 122.6
2261 Male, age 18, unknown 120.3
1913 Female, age 42, unknown 119.5
1839 Male, age 51, unknown 119.1
1796 Male, age 53, unknown 111.7
2587 Male, age 74, left hemisphere 106.5
1895 Male, age 76, right hemisphere 86.6
2087 Female, age 72, unknown 82.9
Ventral tegmental area
nTPM: 111.8
1942 Male, age 51, unknown 123.8
2021 Male, age 53, unknown 123.4
1915 Female, age 42, unknown 115.4
2223 Female, age 72, unknown 114.4
2218 Male, age 76, both hemispheres 98.2
2410 Female, age 72, unknown 95.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 98.6
Min nTPM: 6.1
Std nTPM: 18.0
Median nTPM: 40.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 98.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 90.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 88.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 87.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 86.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 83.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 81.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 79.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 77.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 73.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 72.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 275.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 275.4
FF:10158-103A5 76 years, female 275.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 19.6
Min nTPM: 17.2
Sample A Male 19.6
Sample B Male 17.2
Sample C Female 18.9
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
70565593 Antisense, RP_050628_01_C09, Mouse strain C57BL/6J (56 days, male) 5.4
75081205 Antisense, RP_060315_03_C10, Mouse strain C57BL/6J (56 days, male) 1.5
69736052 Antisense, RP_050503_04_A12, Mouse strain C57BL/6J (56 days, male) 0.9
Midbrain
Expression energy: 2.6
70565593 Antisense, RP_050628_01_C09, Mouse strain C57BL/6J (56 days, male) 5.4
75081205 Antisense, RP_060315_03_C10, Mouse strain C57BL/6J (56 days, male) 1.5
69736052 Antisense, RP_050503_04_A12, Mouse strain C57BL/6J (56 days, male) 0.9

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