MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.5 nTPM
HPA Brain:56.0 nTPM
GTEx:51.5 nTPM
FANTOM5:134.5 Scaled Tags Per Million
Pig:100.0 nTPM
Mouse:32.0 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.2
2219 Male, age 76, both hemispheres 53.8
2019 Male, age 18, unknown 50.5
1827 Male, age 72, unknown 48.6
2828 Female, age 72, unknown 44.2
2666 Male, age 74, left hemisphere 43.7
1870 Female, age 42, unknown 42.9
2411 Female, age 72, unknown 42.6
2586 Male, age 75, left hemisphere 40.5
1833 Male, age 53, unknown 37.6
1830 Male, age 51, unknown 37.2
Dorsal raphe nucleus
nTPM: 47.3
2047 Male, age 72, unknown 54.1
1828 Male, age 53, unknown 52.2
2750 Male, age 76, both hemispheres 47.9
2298 Female, age 72, unknown 45.8
2016 Female, age 72, unknown 36.3
Inferior colliculus
nTPM: 38.0
2097 Female, age 72, unknown 40.7
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 36.9
2849 Male, age 72, unknown 34.4
Median raphe nucleus
nTPM: 46.2
2220 Male, age 76, midline 46.2
Periaquaductal grey, anterior
nTPM: 43.4
1795 Male, age 51, unknown 47.0
1947 Male, age 18, unknown 46.3
2502 Female, age 75, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 36.8
1840 Male, age 53, unknown 39.8
2464 Female, age 72, unknown 37.5
1831 Male, age 72, unknown 35.8
2850 Male, age 76, both hemispheres 34.4
Periaquaductal grey, lateral
nTPM: 36.0
2272 Male, age 74, both hemispheres 38.7
2140 Male, age 76, both hemispheres 35.9
2053 Male, age 18, unknown 33.4
Pretectal area
nTPM: 47.7
2007 Male, age 72, unknown 60.6
2667 Female, age 75, unknown 58.3
1816 Male, age 51, unknown 56.9
1817 Female, age 42, unknown 53.6
1944 Female, age 72, unknown 50.8
1815 Male, age 53, unknown 48.5
2407 Male, age 75, both hemispheres 42.8
2224 Female, age 72, unknown 40.4
2825 Male, age 18, unknown 39.9
2273 Male, age 74, both hemispheres 36.4
2316 Male, age 76, right hemisphere 36.3
Red nucleus
nTPM: 44.6
1821 Female, age 72, unknown 53.4
2584 Male, age 75, left hemisphere 51.2
2588 Male, age 74, left hemisphere 50.4
2725 Female, age 75, unknown 48.9
2823 Male, age 76, right hemisphere 44.3
2503 Female, age 72, unknown 43.2
2785 Male, age 18, unknown 43.1
1865 Male, age 51, unknown 42.9
1904 Male, age 53, unknown 41.5
2769 Male, age 72, unknown 39.1
1954 Female, age 42, unknown 38.6
2227 Male, age 72, unknown 38.6
Substantia nigra
nTPM: 56.0
1916 Female, age 42, unknown 78.6
1851 Male, age 51, unknown 67.0
1941 Male, age 53, unknown 61.0
2409 Female, age 72, unknown 60.6
1889 Female, age 72, unknown 57.6
2241 Male, age 72, unknown 57.5
2699 Male, age 18, unknown 51.6
2590 Female, age 75, unknown 45.0
2665 Male, age 74, both hemispheres 44.0
2583 Male, age 75, right hemisphere 37.4
Superior colliculus
nTPM: 42.5
2087 Female, age 72, unknown 50.6
2261 Male, age 18, unknown 47.3
1796 Male, age 53, unknown 45.8
1895 Male, age 76, right hemisphere 43.9
2668 Female, age 75, unknown 43.9
2664 Male, age 75, both hemispheres 43.7
2587 Male, age 74, left hemisphere 41.1
1913 Female, age 42, unknown 37.9
1995 Male, age 72, unknown 36.0
1839 Male, age 51, unknown 34.7
Ventral tegmental area
nTPM: 50.0
2218 Male, age 76, both hemispheres 59.2
1915 Female, age 42, unknown 57.9
2410 Female, age 72, unknown 54.2
1942 Male, age 51, unknown 45.4
2223 Female, age 72, unknown 44.7
2021 Male, age 53, unknown 38.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.5
Samples: 139

Max nTPM: 132.0
Min nTPM: 22.7
Std nTPM: 17.8
Median nTPM: 49.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 132.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 115.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 108.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 98.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 86.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 79.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 78.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 76.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.5
FF:10158-103A5 76 years, female 134.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.3
Samples: 4

Max nTPM: 110.7
Min nTPM: 65.0
Sample A Female 110.7
Sample B Female 65.0
Sample C Male 88.4
Sample D Male 69.2
Midbrain
nTPM: 94.1
Samples: 4

Max nTPM: 111.6
Min nTPM: 79.0
Sample A Female 97.8
Sample B Female 79.0
Sample C Male 111.6
Sample D Male 87.8
Periaqueductal gray
nTPM: 69.4
Samples: 3

Max nTPM: 80.1
Min nTPM: 58.3
Sample B Female 69.9
Sample C Male 80.1
Sample D Male 58.3
Superior colliculi
nTPM: 100.0
Samples: 4

Max nTPM: 120.3
Min nTPM: 73.0
Sample A Female 116.2
Sample B Female 73.0
Sample C Male 120.3
Sample D Male 90.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 26.9
Sample A Male 37.6
Sample B Male 32.2
Sample C Female 31.4
Sample D Female 26.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
67881785 Antisense, RP_040923_01_A03, Mouse strain C57BL/6J (56 days, male) 13.0
74658173 Antisense, RP_060220_02_D01, Mouse strain C57BL/6J (56 days, male) 11.6

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