HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.0 nTPM
HPA Brain:163.6 nTPM
GTEx:106.0 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:43.5 nTPM
Mouse:37.4 nTPM
Allen mouse:11.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 163.6
Sample id Sample description nTPM
Hippocampus
nTPM: 131.9
2621 Female, age 67, right hemisphere 162.3
2148 Female, age 91, left hemisphere 153.8
1911 Female, age 85, right hemisphere 131.3
2529 Female, age 94, left hemisphere 124.0
1855 Male, age 76, left hemisphere 109.9
1898 Male, age 80, left hemisphere 109.9
Dentate gyrus
nTPM: 139.7
2531 Female, age 67, both hemispheres 214.1
1927 Female, age 91, both hemispheres 152.1
2246 Female, age 85, both hemispheres 125.7
2528 Male, age 74, both hemispheres 120.2
2010 Male, age 76, both hemispheres 118.2
2530 Female, age 94, left hemisphere 107.6
Entorhinal gyrus
nTPM: 118.0
2613 Female, age 94, left hemisphere 140.5
2686 Male, age 75, right hemisphere 130.2
1787 Male, age 76, left hemisphere 123.7
1938 Female, age 85, left hemisphere 119.0
2764 Male, age 80, right hemisphere 110.8
2117 Female, age 91, right hemisphere 83.6
Hippocampus, CA1
nTPM: 135.4
2045 Male, age 76, both hemispheres 156.5
2082 Female, age 91, right hemisphere 155.7
2749 Male, age 80, left hemisphere 131.3
2527 Male, age 74, both hemispheres 117.4
1873 Female, age 85, both hemispheres 116.1
Hippocampus, CA2
nTPM: 115.1
1940 Female, age 85, left hemisphere 133.8
2113 Female, age 91, right hemisphere 126.3
1892 Male, age 76, both hemispheres 115.2
2249 Male, age 74, both hemispheres 107.3
2437 Female, age 94, left hemisphere 104.6
1963 Male, age 80, left hemisphere 103.0
Hippocampus, CA3
nTPM: 163.6
2861 Female, age 67, both hemispheres 232.3
2620 Female, age 94, left hemisphere 218.2
2137 Male, age 80, left hemisphere 161.4
2436 Male, age 74, both hemispheres 137.0
1867 Male, age 76, both hemispheres 131.5
1891 Female, age 85, both hemispheres 101.1
Parahippocampal cortex
nTPM: 115.4
2622 Female, age 67, right hemisphere 151.1
2245 Female, age 91, both hemispheres 126.5
2532 Female, age 72, left hemisphere 122.5
2693 Female, age 94, both hemispheres 121.1
1933 Female, age 85, both hemispheres 117.1
2250 Female, age 67, right hemisphere 113.4
2018 Male, age 76, both hemispheres 109.8
1990 Female, age 91, right hemisphere 101.4
2692 Male, age 74, both hemispheres 95.9
1850 Male, age 80, both hemispheres 94.9
Perirhinal gyrus
nTPM: 117.0
1847 Female, age 91, left hemisphere 127.3
2521 Female, age 94, right hemisphere 122.6
2848 Male, age 76, right hemisphere 114.3
1841 Female, age 85, right hemisphere 112.3
1794 Male, age 80, right hemisphere 108.5
Subiculum
nTPM: 99.3
2729 Female, age 91, right hemisphere 114.4
1977 Female, age 85, both hemispheres 111.6
2042 Male, age 76, both hemispheres 102.4
1901 Male, age 80, both hemispheres 97.8
2619 Male, age 74, both hemispheres 90.3
2438 Female, age 94, left hemisphere 79.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 106.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 106.0
Samples: 197

Max nTPM: 269.7
Min nTPM: 18.9
Std nTPM: 45.3
Median nTPM: 102.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 269.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 257.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 225.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 212.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 212.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 203.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 199.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 198.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 186.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 182.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 181.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 34.6
FF:10153-102I9 76 years, female 36.1
FF:10169-103B7 60 years, female 33.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 43.5
Pig sample Sample description nTPM
Subiculum
nTPM: 39.3
Samples: 4

Max nTPM: 51.5
Min nTPM: 32.1
Sample A Female 51.5
Sample B Female 35.8
Sample C Male 37.6
Sample D Male 32.1
Dorsal hippocampus
nTPM: 42.2
Samples: 4

Max nTPM: 48.8
Min nTPM: 37.3
Sample A Female 48.8
Sample B Female 45.1
Sample C Male 37.3
Sample D Male 37.7
Entorhinal cortex
nTPM: 43.5
Samples: 4

Max nTPM: 49.3
Min nTPM: 38.9
Sample A Female 45.0
Sample B Female 38.9
Sample C Male 49.3
Sample D Male 40.7
Ventral hippocampus
nTPM: 41.9
Samples: 4

Max nTPM: 49.6
Min nTPM: 34.8
Sample A Female 34.9
Sample B Female 34.8
Sample C Male 48.3
Sample D Male 49.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 37.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 43.0
Min nTPM: 28.8
Sample A Male 37.8
Sample B Male 43.0
Sample C Female 33.6
Sample D Female 28.8
Hippocampal formation
nTPM: 37.4
Samples: 4

Max nTPM: 41.2
Min nTPM: 34.1
Sample A Male 34.1
Sample B Male 40.1
Sample C Female 34.1
Sample D Female 41.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.9
73817987 Antisense, RP_051214_01_B01, Mouse strain C57BL/6J (56 days, male) 13.0
68076537 Antisense, RP_040923_02_E08, Mouse strain C57BL/6J (56 days, male) 10.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org