MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.1 nTPM
HPA Brain:39.8 nTPM
GTEx:43.1 nTPM
FANTOM5:36.7 Scaled Tags Per Million
Pig:106.6 nTPM
Mouse:42.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.3
2586 Male, age 75, left hemisphere 58.6
2019 Male, age 18, unknown 44.5
2828 Female, age 72, unknown 37.5
2666 Male, age 74, left hemisphere 36.9
1870 Female, age 42, unknown 35.9
1830 Male, age 51, unknown 34.5
2411 Female, age 72, unknown 34.3
1827 Male, age 72, unknown 34.2
2219 Male, age 76, both hemispheres 34.0
1833 Male, age 53, unknown 32.6
Dorsal raphe nucleus
nTPM: 34.8
1828 Male, age 53, unknown 37.3
2016 Female, age 72, unknown 35.8
2047 Male, age 72, unknown 34.3
2298 Female, age 72, unknown 33.3
2750 Male, age 76, both hemispheres 33.1
Inferior colliculus
nTPM: 36.1
1890 Male, age 53, unknown 37.1
2097 Female, age 72, unknown 36.7
1848 Female, age 42, unknown 35.4
2849 Male, age 72, unknown 35.3
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 36.0
2502 Female, age 75, unknown 39.1
1947 Male, age 18, unknown 36.2
1795 Male, age 51, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 30.7
1840 Male, age 53, unknown 33.6
2464 Female, age 72, unknown 33.5
1831 Male, age 72, unknown 28.3
2850 Male, age 76, both hemispheres 27.4
Periaquaductal grey, lateral
nTPM: 29.5
2272 Male, age 74, both hemispheres 30.9
2053 Male, age 18, unknown 29.3
2140 Male, age 76, both hemispheres 28.4
Pretectal area
nTPM: 35.5
2007 Male, age 72, unknown 44.9
1817 Female, age 42, unknown 41.9
1816 Male, age 51, unknown 38.4
1815 Male, age 53, unknown 37.2
1944 Female, age 72, unknown 37.0
2407 Male, age 75, both hemispheres 33.8
2316 Male, age 76, right hemisphere 32.1
2667 Female, age 75, unknown 32.0
2825 Male, age 18, unknown 31.8
2273 Male, age 74, both hemispheres 30.9
2224 Female, age 72, unknown 30.6
Red nucleus
nTPM: 39.8
2503 Female, age 72, unknown 44.7
2785 Male, age 18, unknown 43.8
2227 Male, age 72, unknown 42.8
2769 Male, age 72, unknown 41.5
2588 Male, age 74, left hemisphere 41.1
1865 Male, age 51, unknown 40.6
1954 Female, age 42, unknown 39.9
1821 Female, age 72, unknown 39.8
1904 Male, age 53, unknown 37.8
2725 Female, age 75, unknown 35.9
2584 Male, age 75, left hemisphere 35.4
2823 Male, age 76, right hemisphere 34.0
Substantia nigra
nTPM: 36.6
2583 Male, age 75, right hemisphere 40.6
1916 Female, age 42, unknown 40.5
1851 Male, age 51, unknown 40.1
1889 Female, age 72, unknown 38.6
1941 Male, age 53, unknown 37.4
2665 Male, age 74, both hemispheres 36.7
2590 Female, age 75, unknown 35.7
2241 Male, age 72, unknown 33.4
2699 Male, age 18, unknown 32.9
2409 Female, age 72, unknown 29.7
Superior colliculus
nTPM: 35.6
2664 Male, age 75, both hemispheres 40.5
2668 Female, age 75, unknown 40.4
2587 Male, age 74, left hemisphere 36.1
1796 Male, age 53, unknown 36.0
1839 Male, age 51, unknown 35.7
2087 Female, age 72, unknown 34.6
1913 Female, age 42, unknown 34.0
1995 Male, age 72, unknown 33.2
2261 Male, age 18, unknown 33.2
1895 Male, age 76, right hemisphere 32.2
Ventral tegmental area
nTPM: 34.9
2410 Female, age 72, unknown 38.6
1915 Female, age 42, unknown 38.1
2223 Female, age 72, unknown 34.4
1942 Male, age 51, unknown 33.8
2218 Male, age 76, both hemispheres 32.6
2021 Male, age 53, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.1
Samples: 139

Max nTPM: 83.2
Min nTPM: 25.6
Std nTPM: 9.8
Median nTPM: 41.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 83.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 82.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 70.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 67.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 62.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 62.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 60.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 59.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 58.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 57.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 57.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.7
FF:10158-103A5 76 years, female 36.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 106.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.0
Samples: 4

Max nTPM: 125.8
Min nTPM: 73.7
Sample A Female 125.8
Sample B Female 73.7
Sample C Male 78.1
Sample D Male 90.4
Midbrain
nTPM: 106.6
Samples: 4

Max nTPM: 164.5
Min nTPM: 76.9
Sample A Female 164.5
Sample B Female 76.9
Sample C Male 101.9
Sample D Male 82.9
Periaqueductal gray
nTPM: 77.5
Samples: 3

Max nTPM: 80.9
Min nTPM: 71.7
Sample B Female 79.8
Sample C Male 80.9
Sample D Male 71.7
Superior colliculi
nTPM: 103.1
Samples: 4

Max nTPM: 131.4
Min nTPM: 89.8
Sample A Female 131.4
Sample B Female 90.2
Sample C Male 101.0
Sample D Male 89.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 46.2
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 42.0
Sample C Female 43.1
Sample D Female 46.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69080513 Antisense, RP_050324_02_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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