MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.2 nTPM
HPA Brain:91.9 nTPM
GTEx:48.2 nTPM
FANTOM5:128.3 Scaled Tags Per Million
Pig:98.6 nTPM
Mouse:305.2 nTPM
Allen mouse:16.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.9
2411 Female, age 72, unknown 102.1
1827 Male, age 72, unknown 89.9
2666 Male, age 74, left hemisphere 77.1
2019 Male, age 18, unknown 76.9
1870 Female, age 42, unknown 76.0
2219 Male, age 76, both hemispheres 73.7
1833 Male, age 53, unknown 73.2
2586 Male, age 75, left hemisphere 70.6
1830 Male, age 51, unknown 65.0
2828 Female, age 72, unknown 64.2
Dorsal raphe nucleus
nTPM: 86.7
2298 Female, age 72, unknown 106.9
2047 Male, age 72, unknown 85.0
2750 Male, age 76, both hemispheres 82.5
2016 Female, age 72, unknown 81.4
1828 Male, age 53, unknown 77.6
Inferior colliculus
nTPM: 75.4
2097 Female, age 72, unknown 81.0
1890 Male, age 53, unknown 79.5
1848 Female, age 42, unknown 73.7
2849 Male, age 72, unknown 67.4
Median raphe nucleus
nTPM: 76.0
2220 Male, age 76, midline 76.0
Periaquaductal grey, anterior
nTPM: 85.9
2502 Female, age 75, unknown 91.3
1947 Male, age 18, unknown 84.5
1795 Male, age 51, unknown 82.1
Periaquaductal grey, dorsal
nTPM: 83.4
1840 Male, age 53, unknown 97.1
2464 Female, age 72, unknown 81.3
2850 Male, age 76, both hemispheres 80.3
1831 Male, age 72, unknown 75.0
Periaquaductal grey, lateral
nTPM: 72.5
2053 Male, age 18, unknown 81.0
2140 Male, age 76, both hemispheres 72.0
2272 Male, age 74, both hemispheres 64.4
Pretectal area
nTPM: 85.5
1816 Male, age 51, unknown 102.1
2224 Female, age 72, unknown 97.4
2007 Male, age 72, unknown 96.2
1817 Female, age 42, unknown 90.7
1944 Female, age 72, unknown 90.5
1815 Male, age 53, unknown 86.1
2667 Female, age 75, unknown 84.5
2273 Male, age 74, both hemispheres 76.2
2825 Male, age 18, unknown 74.2
2407 Male, age 75, both hemispheres 73.1
2316 Male, age 76, right hemisphere 69.8
Red nucleus
nTPM: 70.2
1821 Female, age 72, unknown 86.7
2503 Female, age 72, unknown 75.7
2725 Female, age 75, unknown 71.8
2785 Male, age 18, unknown 71.8
1865 Male, age 51, unknown 69.3
1904 Male, age 53, unknown 69.0
1954 Female, age 42, unknown 68.9
2588 Male, age 74, left hemisphere 68.8
2823 Male, age 76, right hemisphere 66.6
2584 Male, age 75, left hemisphere 65.9
2769 Male, age 72, unknown 65.4
2227 Male, age 72, unknown 62.5
Substantia nigra
nTPM: 91.9
1916 Female, age 42, unknown 114.3
2241 Male, age 72, unknown 113.6
1851 Male, age 51, unknown 109.5
2409 Female, age 72, unknown 94.0
1889 Female, age 72, unknown 93.6
2665 Male, age 74, both hemispheres 90.9
2699 Male, age 18, unknown 84.9
1941 Male, age 53, unknown 80.4
2583 Male, age 75, right hemisphere 69.3
2590 Female, age 75, unknown 68.5
Superior colliculus
nTPM: 81.5
2668 Female, age 75, unknown 98.2
2587 Male, age 74, left hemisphere 94.5
1796 Male, age 53, unknown 87.5
1895 Male, age 76, right hemisphere 86.0
2261 Male, age 18, unknown 85.9
2087 Female, age 72, unknown 84.2
1839 Male, age 51, unknown 72.8
1913 Female, age 42, unknown 72.6
1995 Male, age 72, unknown 72.1
2664 Male, age 75, both hemispheres 60.9
Ventral tegmental area
nTPM: 87.7
2410 Female, age 72, unknown 104.6
1915 Female, age 42, unknown 94.4
2021 Male, age 53, unknown 84.7
1942 Male, age 51, unknown 82.2
2218 Male, age 76, both hemispheres 82.2
2223 Female, age 72, unknown 78.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 117.6
Min nTPM: 15.1
Std nTPM: 15.8
Median nTPM: 45.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 117.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 111.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 96.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 83.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 81.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 77.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 73.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 71.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 67.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 65.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.3
FF:10158-103A5 76 years, female 128.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 94.8
Samples: 4

Max nTPM: 117.3
Min nTPM: 79.1
Sample A Female 117.3
Sample B Female 79.9
Sample C Male 102.7
Sample D Male 79.1
Midbrain
nTPM: 98.6
Samples: 4

Max nTPM: 104.8
Min nTPM: 90.3
Sample A Female 104.8
Sample B Female 90.3
Sample C Male 99.6
Sample D Male 99.8
Periaqueductal gray
nTPM: 92.6
Samples: 3

Max nTPM: 103.2
Min nTPM: 85.6
Sample B Female 89.1
Sample C Male 103.2
Sample D Male 85.6
Superior colliculi
nTPM: 93.5
Samples: 4

Max nTPM: 105.6
Min nTPM: 73.5
Sample A Female 105.6
Sample B Female 73.5
Sample C Male 98.9
Sample D Male 96.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 305.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 305.2
Samples: 4

Max nTPM: 312.1
Min nTPM: 294.2
Sample A Male 303.9
Sample B Male 312.1
Sample C Female 310.6
Sample D Female 294.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.6
70919698 Antisense, RP_050713_01_H06, Mouse strain C57BL/6J (56 days, male) 17.4
544899 Antisense, RP_040617_02_H01, Mouse strain C57BL/6J (56 days, male) 15.9

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