MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:19.8 nTPM
GTEx:12.3 nTPM
FANTOM5:24.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.0
2219 Male, age 76, both hemispheres 20.4
1830 Male, age 51, unknown 19.1
2411 Female, age 72, unknown 18.7
1833 Male, age 53, unknown 18.4
2828 Female, age 72, unknown 18.0
1827 Male, age 72, unknown 17.8
1870 Female, age 42, unknown 17.8
2666 Male, age 74, left hemisphere 17.4
2019 Male, age 18, unknown 16.9
2586 Male, age 75, left hemisphere 15.2
Dorsal raphe nucleus
nTPM: 17.5
2750 Male, age 76, both hemispheres 19.5
2016 Female, age 72, unknown 18.4
2047 Male, age 72, unknown 17.1
1828 Male, age 53, unknown 16.9
2298 Female, age 72, unknown 15.4
Inferior colliculus
nTPM: 17.5
2849 Male, age 72, unknown 18.7
1890 Male, age 53, unknown 17.6
1848 Female, age 42, unknown 17.3
2097 Female, age 72, unknown 16.5
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 17.2
1947 Male, age 18, unknown 19.3
1795 Male, age 51, unknown 17.3
2502 Female, age 75, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 18.0
2850 Male, age 76, both hemispheres 18.7
2464 Female, age 72, unknown 18.4
1840 Male, age 53, unknown 17.7
1831 Male, age 72, unknown 16.9
Periaquaductal grey, lateral
nTPM: 19.7
2140 Male, age 76, both hemispheres 22.3
2272 Male, age 74, both hemispheres 18.7
2053 Male, age 18, unknown 18.2
Pretectal area
nTPM: 17.0
2273 Male, age 74, both hemispheres 19.4
2825 Male, age 18, unknown 18.6
2316 Male, age 76, right hemisphere 18.3
2407 Male, age 75, both hemispheres 18.3
2667 Female, age 75, unknown 18.3
2224 Female, age 72, unknown 17.6
1815 Male, age 53, unknown 16.5
1944 Female, age 72, unknown 15.4
2007 Male, age 72, unknown 15.4
1816 Male, age 51, unknown 14.8
1817 Female, age 42, unknown 14.8
Red nucleus
nTPM: 17.9
2823 Male, age 76, right hemisphere 20.2
1865 Male, age 51, unknown 19.9
2725 Female, age 75, unknown 18.6
2503 Female, age 72, unknown 18.3
2588 Male, age 74, left hemisphere 18.1
1954 Female, age 42, unknown 17.7
2769 Male, age 72, unknown 17.7
1904 Male, age 53, unknown 17.6
2227 Male, age 72, unknown 17.1
2584 Male, age 75, left hemisphere 17.0
2785 Male, age 18, unknown 16.4
1821 Female, age 72, unknown 15.7
Substantia nigra
nTPM: 16.0
2409 Female, age 72, unknown 18.8
2241 Male, age 72, unknown 17.3
2590 Female, age 75, unknown 17.2
2583 Male, age 75, right hemisphere 16.9
2699 Male, age 18, unknown 15.8
1941 Male, age 53, unknown 15.4
1889 Female, age 72, unknown 15.2
2665 Male, age 74, both hemispheres 14.7
1851 Male, age 51, unknown 14.5
1916 Female, age 42, unknown 14.0
Superior colliculus
nTPM: 17.0
1895 Male, age 76, right hemisphere 18.6
1995 Male, age 72, unknown 18.3
1796 Male, age 53, unknown 18.0
1913 Female, age 42, unknown 18.0
1839 Male, age 51, unknown 17.8
2261 Male, age 18, unknown 17.2
2087 Female, age 72, unknown 16.2
2587 Male, age 74, left hemisphere 16.1
2668 Female, age 75, unknown 15.8
2664 Male, age 75, both hemispheres 14.2
Ventral tegmental area
nTPM: 16.6
2021 Male, age 53, unknown 17.1
2218 Male, age 76, both hemispheres 17.0
2223 Female, age 72, unknown 16.8
2410 Female, age 72, unknown 16.8
1942 Male, age 51, unknown 16.6
1915 Female, age 42, unknown 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 29.9
Min nTPM: 7.0
Std nTPM: 3.3
Median nTPM: 12.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 29.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 24.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 19.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 19.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 18.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 16.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 16.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

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