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CLIP1
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  • TISSUE

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  • CLIP1
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CLIP1
Synonyms CLIP, CLIP-170, CLIP170, CYLN1, RSN
Gene descriptioni

Full gene name according to HGNC.

CAP-Gly domain containing linker protein 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q24.31
Chromosome location (bp) 122271432 - 122422669
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000130779 (version 109)
Entrez gene 6249
HGNC HGNC:10461
UniProt P30622 (UniProt - Evidence at protein level)
neXtProt NX_P30622
GeneCards CLIP1
Antibodypedia CLIP1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene links endocytic vesicles to microtubules. This gene is highly expressed in Reed-Sternberg cells of Hodgkin disease. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CLIP1-201
ENSP00000303585
ENST00000302528
P30622
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
A0A024RBR1
[Target identity:100%; Query identity:100%] Restin (Reed-Steinberg cell-expressed intermediate filament-associated protein), isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000278 [mitotic cell cycle]
GO:0000776 [kinetochore]
GO:0001578 [microtubule bundle formation]
GO:0001726 [ruffle]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005882 [intermediate filament]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0015630 [microtubule cytoskeleton]
GO:0015631 [tubulin binding]
GO:0016020 [membrane]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031116 [positive regulation of microtubule polymerization]
GO:0031122 [cytoplasmic microtubule organization]
GO:0031410 [cytoplasmic vesicle]
GO:0035371 [microtubule plus-end]
GO:0042802 [identical protein binding]
GO:0042995 [cell projection]
GO:0044354 [macropinosome]
GO:0046872 [metal ion binding]
GO:0051010 [microtubule plus-end binding]
Show all
1427 aa
161 kDa
No 0
CLIP1-202
ENSP00000351665
ENST00000358808
P30622
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
A0A024RBR1
[Target identity:100%; Query identity:100%] Restin (Reed-Steinberg cell-expressed intermediate filament-associated protein), isoform CRA_b
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000278 [mitotic cell cycle]
GO:0000776 [kinetochore]
GO:0001578 [microtubule bundle formation]
GO:0001726 [ruffle]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005882 [intermediate filament]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0015630 [microtubule cytoskeleton]
GO:0015631 [tubulin binding]
GO:0016020 [membrane]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031116 [positive regulation of microtubule polymerization]
GO:0031122 [cytoplasmic microtubule organization]
GO:0031410 [cytoplasmic vesicle]
GO:0035371 [microtubule plus-end]
GO:0042802 [identical protein binding]
GO:0042995 [cell projection]
GO:0044354 [macropinosome]
GO:0046872 [metal ion binding]
GO:0051010 [microtubule plus-end binding]
Show all
1427 aa
161 kDa
No 0
CLIP1-203
ENSP00000355314
ENST00000361654
J3KP58
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005856 [cytoskeleton]
Show all
1316 aa
148.1 kDa
No 0
CLIP1-206
ENSP00000439472
ENST00000535290
F5H270
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
108 aa
11.5 kDa
No 0
CLIP1-209
ENSP00000497285
ENST00000537123
A0A3B3ISJ8
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
867 aa
99.5 kDa
No 0
CLIP1-210
ENSP00000445531
ENST00000537178
P30622
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000278 [mitotic cell cycle]
GO:0000776 [kinetochore]
GO:0001578 [microtubule bundle formation]
GO:0001726 [ruffle]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005882 [intermediate filament]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0015630 [microtubule cytoskeleton]
GO:0015631 [tubulin binding]
GO:0016020 [membrane]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031116 [positive regulation of microtubule polymerization]
GO:0031122 [cytoplasmic microtubule organization]
GO:0031410 [cytoplasmic vesicle]
GO:0035371 [microtubule plus-end]
GO:0042995 [cell projection]
GO:0044354 [macropinosome]
GO:0046872 [metal ion binding]
GO:0051010 [microtubule plus-end binding]
Show all
1392 aa
156.8 kDa
No 0
CLIP1-212
ENSP00000445387
ENST00000539080
F5H367
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
83 aa
8.9 kDa
No 0
CLIP1-213
ENSP00000437786
ENST00000540304
F5H6A0
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
802 aa
89.5 kDa
No 0
CLIP1-218
ENSP00000438743
ENST00000545889
F5H0N7
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005856 [cytoskeleton]
Show all
1063 aa
121.6 kDa
No 0
CLIP1-219
ENSP00000479322
ENST00000620786
P30622
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000278 [mitotic cell cycle]
GO:0000776 [kinetochore]
GO:0001578 [microtubule bundle formation]
GO:0001726 [ruffle]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005882 [intermediate filament]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0015630 [microtubule cytoskeleton]
GO:0015631 [tubulin binding]
GO:0016020 [membrane]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031116 [positive regulation of microtubule polymerization]
GO:0031122 [cytoplasmic microtubule organization]
GO:0031410 [cytoplasmic vesicle]
GO:0035371 [microtubule plus-end]
GO:0042995 [cell projection]
GO:0044354 [macropinosome]
GO:0046872 [metal ion binding]
GO:0051010 [microtubule plus-end binding]
Show all
1438 aa
162.2 kDa
No 0
CLIP1-220
ENSP00000497665
ENST00000648993
A0A3B3ITA2
[Direct mapping] CAP-Gly domain-containing linker protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005856 [cytoskeleton]
Show all
791 aa
91.2 kDa
No 0

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