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CCDC62
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  • CCDC62
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CCDC62
Synonyms CT109, ERAP75, FLJ40344, TSP-NY
Gene descriptioni

Full gene name according to HGNC.

Coiled-coil domain containing 62
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q24.31
Chromosome location (bp) 122774526 - 122827528
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000130783 (version 109)
Entrez gene 84660
HGNC HGNC:30723
UniProt Q6P9F0 (UniProt - Evidence at protein level)
neXtProt NX_Q6P9F0
GeneCards CCDC62
Antibodypedia CCDC62 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Nuclear receptor coactivator that can enhance preferentially estrogen receptors ESR1 and ESR2 transactivation. Modulates also progesterone/PGR, glucocorticoid/NR3C1 and androgen/AR receptors transactivation, although at lower level; little effect on vitamin D receptor/VDR. Required for normal spermiogenesis. It probably plays a role in acrosome formation (By similarity).... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables estrogen receptor binding activity and nuclear receptor coactivator activity. Involved in cellular response to estradiol stimulus and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CCDC62-201
ENSP00000253079
ENST00000253079
Q6P9F0
[Direct mapping] Coiled-coil domain-containing protein 62
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0001669 [acrosomal vesicle]
GO:0001835 [blastocyst hatching]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0007286 [spermatid development]
GO:0030331 [nuclear estrogen receptor binding]
GO:0030374 [nuclear receptor coactivator activity]
GO:0031410 [cytoplasmic vesicle]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0071392 [cellular response to estradiol stimulus]
Show all
684 aa
77.7 kDa
No 0
CCDC62-203
ENSP00000376235
ENST00000392440
A0A024RBT8
[Direct mapping] Coiled-coil domain containing 62, isoform CRA_a; Coiled-coil domain-containing protein 62
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
GO:0005654 [nucleoplasm]
GO:0005886 [plasma membrane]
Show all
497 aa
56.5 kDa
No 0
CCDC62-204
ENSP00000376236
ENST00000392441
Q6P9F0
[Direct mapping] Coiled-coil domain-containing protein 62
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001669 [acrosomal vesicle]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0007286 [spermatid development]
GO:0030331 [nuclear estrogen receptor binding]
GO:0030374 [nuclear receptor coactivator activity]
GO:0031410 [cytoplasmic vesicle]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0071392 [cellular response to estradiol stimulus]
Show all
682 aa
77.5 kDa
No 0
CCDC62-205
ENSP00000445045
ENST00000537566
Q6P9F0
[Direct mapping] Coiled-coil domain-containing protein 62
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001669 [acrosomal vesicle]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0007286 [spermatid development]
GO:0030331 [nuclear estrogen receptor binding]
GO:0030374 [nuclear receptor coactivator activity]
GO:0031410 [cytoplasmic vesicle]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0071392 [cellular response to estradiol stimulus]
Show all
445 aa
49.9 kDa
No 0
CCDC62-206
ENSP00000439893
ENST00000539171
F5H0F1
[Direct mapping] Coiled-coil domain-containing protein 62
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
64 aa
7 kDa
No 0

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