MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.0 nTPM
HPA Brain:123.5 nTPM
GTEx:79.0 nTPM
FANTOM5:125.6 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:14.5 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.5
2828 Female, age 72, unknown 129.5
2411 Female, age 72, unknown 121.9
2019 Male, age 18, unknown 114.4
1833 Male, age 53, unknown 111.3
2586 Male, age 75, left hemisphere 109.9
1870 Female, age 42, unknown 109.4
1830 Male, age 51, unknown 105.6
1827 Male, age 72, unknown 97.5
2219 Male, age 76, both hemispheres 91.6
2666 Male, age 74, left hemisphere 83.5
Dorsal raphe nucleus
nTPM: 83.3
2750 Male, age 76, both hemispheres 100.9
2016 Female, age 72, unknown 96.4
1828 Male, age 53, unknown 89.2
2047 Male, age 72, unknown 68.1
2298 Female, age 72, unknown 61.8
Inferior colliculus
nTPM: 85.1
2849 Male, age 72, unknown 96.8
1848 Female, age 42, unknown 92.8
1890 Male, age 53, unknown 81.7
2097 Female, age 72, unknown 68.9
Median raphe nucleus
nTPM: 66.9
2220 Male, age 76, midline 66.9
Periaquaductal grey, anterior
nTPM: 99.2
2502 Female, age 75, unknown 128.5
1795 Male, age 51, unknown 95.5
1947 Male, age 18, unknown 73.7
Periaquaductal grey, dorsal
nTPM: 79.9
2464 Female, age 72, unknown 106.8
1831 Male, age 72, unknown 76.6
1840 Male, age 53, unknown 73.8
2850 Male, age 76, both hemispheres 62.4
Periaquaductal grey, lateral
nTPM: 90.0
2053 Male, age 18, unknown 100.0
2140 Male, age 76, both hemispheres 90.3
2272 Male, age 74, both hemispheres 79.8
Pretectal area
nTPM: 101.3
2316 Male, age 76, right hemisphere 147.1
2667 Female, age 75, unknown 142.7
1815 Male, age 53, unknown 107.7
1944 Female, age 72, unknown 99.2
1816 Male, age 51, unknown 94.6
2007 Male, age 72, unknown 93.9
2407 Male, age 75, both hemispheres 91.3
1817 Female, age 42, unknown 90.7
2825 Male, age 18, unknown 86.7
2273 Male, age 74, both hemispheres 82.6
2224 Female, age 72, unknown 78.3
Red nucleus
nTPM: 123.5
2823 Male, age 76, right hemisphere 154.5
2588 Male, age 74, left hemisphere 143.6
2769 Male, age 72, unknown 142.4
2227 Male, age 72, unknown 138.8
1904 Male, age 53, unknown 137.0
2503 Female, age 72, unknown 136.6
2785 Male, age 18, unknown 121.1
1865 Male, age 51, unknown 119.1
1954 Female, age 42, unknown 112.3
1821 Female, age 72, unknown 110.5
2584 Male, age 75, left hemisphere 90.9
2725 Female, age 75, unknown 75.5
Substantia nigra
nTPM: 86.2
2699 Male, age 18, unknown 114.0
1851 Male, age 51, unknown 96.6
2665 Male, age 74, both hemispheres 93.7
2583 Male, age 75, right hemisphere 93.5
2409 Female, age 72, unknown 89.9
1889 Female, age 72, unknown 86.9
1916 Female, age 42, unknown 78.9
2590 Female, age 75, unknown 77.2
1941 Male, age 53, unknown 65.9
2241 Male, age 72, unknown 65.7
Superior colliculus
nTPM: 104.1
1995 Male, age 72, unknown 123.3
1913 Female, age 42, unknown 123.2
1839 Male, age 51, unknown 106.6
2664 Male, age 75, both hemispheres 105.6
1796 Male, age 53, unknown 100.2
1895 Male, age 76, right hemisphere 99.7
2087 Female, age 72, unknown 97.8
2261 Male, age 18, unknown 97.2
2668 Female, age 75, unknown 95.9
2587 Male, age 74, left hemisphere 91.3
Ventral tegmental area
nTPM: 86.3
2410 Female, age 72, unknown 105.8
2021 Male, age 53, unknown 89.8
2223 Female, age 72, unknown 86.6
1915 Female, age 42, unknown 81.0
1942 Male, age 51, unknown 80.2
2218 Male, age 76, both hemispheres 74.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.0
Samples: 139

Max nTPM: 154.9
Min nTPM: 22.3
Std nTPM: 25.0
Median nTPM: 76.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 154.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 154.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 150.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 130.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 130.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 128.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 127.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 124.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 121.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 120.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.6
FF:10158-103A5 76 years, female 125.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.7
Samples: 4

Max nTPM: 63.4
Min nTPM: 25.8
Sample A Female 33.7
Sample B Female 25.8
Sample C Male 39.9
Sample D Male 63.4
Midbrain
nTPM: 41.8
Samples: 4

Max nTPM: 79.1
Min nTPM: 28.7
Sample A Female 79.1
Sample B Female 29.9
Sample C Male 29.3
Sample D Male 28.7
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.7
Min nTPM: 23.7
Sample B Female 26.7
Sample C Male 23.8
Sample D Male 23.7
Superior colliculi
nTPM: 32.6
Samples: 4

Max nTPM: 39.9
Min nTPM: 19.1
Sample A Female 33.1
Sample B Female 19.1
Sample C Male 39.9
Sample D Male 38.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.7
Sample A Male 14.9
Sample B Male 14.8
Sample C Female 15.4
Sample D Female 12.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69735018 Antisense, RP_050503_01_H06, Mouse strain C57BL/6J (56 days, male) 4.5

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