MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA Brain:3.1 nTPM
GTEx:14.8 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:20.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.3
2666 Male, age 74, left hemisphere 4.8
1870 Female, age 42, unknown 3.4
1827 Male, age 72, unknown 2.8
2411 Female, age 72, unknown 2.0
2828 Female, age 72, unknown 2.0
2019 Male, age 18, unknown 1.9
1830 Male, age 51, unknown 1.7
2219 Male, age 76, both hemispheres 1.6
2586 Male, age 75, left hemisphere 1.6
1833 Male, age 53, unknown 0.9
Dorsal raphe nucleus
nTPM: 2.5
2016 Female, age 72, unknown 3.0
1828 Male, age 53, unknown 2.9
2298 Female, age 72, unknown 2.8
2047 Male, age 72, unknown 2.3
2750 Male, age 76, both hemispheres 1.5
Inferior colliculus
nTPM: 2.3
2849 Male, age 72, unknown 3.1
2097 Female, age 72, unknown 2.5
1848 Female, age 42, unknown 2.1
1890 Male, age 53, unknown 1.4
Median raphe nucleus
nTPM: 2.0
2220 Male, age 76, midline 2.0
Periaquaductal grey, anterior
nTPM: 3.1
1947 Male, age 18, unknown 3.8
2502 Female, age 75, unknown 3.2
1795 Male, age 51, unknown 2.3
Periaquaductal grey, dorsal
nTPM: 2.6
1840 Male, age 53, unknown 3.9
2850 Male, age 76, both hemispheres 3.2
2464 Female, age 72, unknown 1.7
1831 Male, age 72, unknown 1.5
Periaquaductal grey, lateral
nTPM: 2.3
2140 Male, age 76, both hemispheres 2.7
2053 Male, age 18, unknown 2.4
2272 Male, age 74, both hemispheres 1.9
Pretectal area
nTPM: 2.4
1817 Female, age 42, unknown 3.8
1815 Male, age 53, unknown 2.9
2224 Female, age 72, unknown 2.9
2825 Male, age 18, unknown 2.9
1816 Male, age 51, unknown 2.6
2667 Female, age 75, unknown 2.4
1944 Female, age 72, unknown 2.2
2007 Male, age 72, unknown 2.2
2316 Male, age 76, right hemisphere 2.0
2273 Male, age 74, both hemispheres 1.6
2407 Male, age 75, both hemispheres 1.4
Red nucleus
nTPM: 2.0
1821 Female, age 72, unknown 3.3
2725 Female, age 75, unknown 3.3
2769 Male, age 72, unknown 2.3
2503 Female, age 72, unknown 2.1
1954 Female, age 42, unknown 2.0
1865 Male, age 51, unknown 1.9
2823 Male, age 76, right hemisphere 1.9
1904 Male, age 53, unknown 1.7
2227 Male, age 72, unknown 1.6
2588 Male, age 74, left hemisphere 1.4
2584 Male, age 75, left hemisphere 1.3
2785 Male, age 18, unknown 1.1
Substantia nigra
nTPM: 2.2
2699 Male, age 18, unknown 3.7
1851 Male, age 51, unknown 2.8
1889 Female, age 72, unknown 2.7
1941 Male, age 53, unknown 2.7
1916 Female, age 42, unknown 2.6
2241 Male, age 72, unknown 1.9
2590 Female, age 75, unknown 1.7
2583 Male, age 75, right hemisphere 1.5
2665 Male, age 74, both hemispheres 1.4
2409 Female, age 72, unknown 0.7
Superior colliculus
nTPM: 1.8
1839 Male, age 51, unknown 4.0
2587 Male, age 74, left hemisphere 2.2
1796 Male, age 53, unknown 2.1
1913 Female, age 42, unknown 2.1
1995 Male, age 72, unknown 1.9
2664 Male, age 75, both hemispheres 1.5
1895 Male, age 76, right hemisphere 1.3
2087 Female, age 72, unknown 1.3
2668 Female, age 75, unknown 1.0
2261 Male, age 18, unknown 0.9
Ventral tegmental area
nTPM: 2.4
1915 Female, age 42, unknown 3.8
2218 Male, age 76, both hemispheres 3.6
2223 Female, age 72, unknown 2.7
2021 Male, age 53, unknown 2.0
2410 Female, age 72, unknown 1.6
1942 Male, age 51, unknown 0.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.8
Samples: 139

Max nTPM: 21.0
Min nTPM: 9.6
Std nTPM: 2.1
Median nTPM: 14.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 21.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 20.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 19.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 19.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 19.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 18.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 18.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.1
Sample A Female 10.7
Sample B Female 8.1
Sample C Male 9.5
Sample D Male 11.2
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 18.2
Min nTPM: 7.6
Sample A Female 18.2
Sample B Female 8.8
Sample C Male 7.6
Sample D Male 7.9
Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 9.7
Min nTPM: 7.9
Sample B Female 7.9
Sample C Male 9.7
Sample D Male 8.9
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.0
Sample A Female 11.3
Sample B Female 9.1
Sample C Male 8.0
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.1
Min nTPM: 18.0
Sample A Male 18.0
Sample B Male 22.1
Sample C Female 20.4
Sample D Female 19.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70305484 Antisense, RP_050609_04_C10, Mouse strain C57BL/6J (56 days, male) 0.3

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