MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.5 nTPM
HPA Brain:72.6 nTPM
GTEx:79.5 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:68.0 nTPM
Mouse:162.8 nTPM
Allen mouse:15.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2666 Male, age 74, left hemisphere 77.4
2586 Male, age 75, left hemisphere 75.8
1827 Male, age 72, unknown 61.6
1870 Female, age 42, unknown 58.1
2411 Female, age 72, unknown 57.7
2219 Male, age 76, both hemispheres 57.2
1833 Male, age 53, unknown 53.9
1830 Male, age 51, unknown 51.4
2828 Female, age 72, unknown 50.5
2019 Male, age 18, unknown 48.7
Dorsal raphe nucleus
nTPM: 58.2
2750 Male, age 76, both hemispheres 63.5
1828 Male, age 53, unknown 61.0
2047 Male, age 72, unknown 60.4
2298 Female, age 72, unknown 54.4
2016 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 61.2
2849 Male, age 72, unknown 74.6
1848 Female, age 42, unknown 61.7
1890 Male, age 53, unknown 55.7
2097 Female, age 72, unknown 52.7
Median raphe nucleus
nTPM: 72.6
2220 Male, age 76, midline 72.6
Periaquaductal grey, anterior
nTPM: 61.1
1947 Male, age 18, unknown 71.4
2502 Female, age 75, unknown 57.6
1795 Male, age 51, unknown 54.3
Periaquaductal grey, dorsal
nTPM: 51.6
1840 Male, age 53, unknown 63.7
2850 Male, age 76, both hemispheres 51.9
2464 Female, age 72, unknown 51.0
1831 Male, age 72, unknown 39.8
Periaquaductal grey, lateral
nTPM: 44.4
2140 Male, age 76, both hemispheres 50.4
2053 Male, age 18, unknown 45.2
2272 Male, age 74, both hemispheres 37.6
Pretectal area
nTPM: 53.5
2007 Male, age 72, unknown 70.5
1816 Male, age 51, unknown 63.3
1817 Female, age 42, unknown 59.2
2825 Male, age 18, unknown 56.6
1815 Male, age 53, unknown 55.3
1944 Female, age 72, unknown 53.8
2224 Female, age 72, unknown 53.0
2316 Male, age 76, right hemisphere 48.9
2407 Male, age 75, both hemispheres 46.9
2667 Female, age 75, unknown 44.7
2273 Male, age 74, both hemispheres 36.4
Red nucleus
nTPM: 59.8
2725 Female, age 75, unknown 75.5
2588 Male, age 74, left hemisphere 75.1
2584 Male, age 75, left hemisphere 65.6
2503 Female, age 72, unknown 62.6
2769 Male, age 72, unknown 61.7
2227 Male, age 72, unknown 61.6
1821 Female, age 72, unknown 58.2
1954 Female, age 42, unknown 56.2
2785 Male, age 18, unknown 54.1
1865 Male, age 51, unknown 51.6
1904 Male, age 53, unknown 49.5
2823 Male, age 76, right hemisphere 46.3
Substantia nigra
nTPM: 61.0
1916 Female, age 42, unknown 80.5
1941 Male, age 53, unknown 71.6
2665 Male, age 74, both hemispheres 64.7
1889 Female, age 72, unknown 64.2
1851 Male, age 51, unknown 60.4
2241 Male, age 72, unknown 60.3
2583 Male, age 75, right hemisphere 55.3
2699 Male, age 18, unknown 53.6
2409 Female, age 72, unknown 49.9
2590 Female, age 75, unknown 49.5
Superior colliculus
nTPM: 51.0
1895 Male, age 76, right hemisphere 59.7
2668 Female, age 75, unknown 59.6
1839 Male, age 51, unknown 57.7
2261 Male, age 18, unknown 57.3
1796 Male, age 53, unknown 54.7
2587 Male, age 74, left hemisphere 54.0
2664 Male, age 75, both hemispheres 49.5
2087 Female, age 72, unknown 44.3
1913 Female, age 42, unknown 40.2
1995 Male, age 72, unknown 32.7
Ventral tegmental area
nTPM: 57.4
1915 Female, age 42, unknown 63.9
2218 Male, age 76, both hemispheres 61.7
1942 Male, age 51, unknown 60.2
2223 Female, age 72, unknown 59.7
2410 Female, age 72, unknown 53.6
2021 Male, age 53, unknown 45.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.5
Samples: 139

Max nTPM: 163.0
Min nTPM: 33.0
Std nTPM: 20.9
Median nTPM: 77.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 163.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 151.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 138.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 131.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 127.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 122.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 116.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 114.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 111.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 110.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 110.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.0
Samples: 4

Max nTPM: 74.2
Min nTPM: 26.5
Sample A Female 74.2
Sample B Female 41.5
Sample C Male 65.8
Sample D Male 26.5
Midbrain
nTPM: 53.5
Samples: 4

Max nTPM: 76.0
Min nTPM: 33.3
Sample A Female 33.3
Sample B Female 46.1
Sample C Male 76.0
Sample D Male 58.6
Periaqueductal gray
nTPM: 44.2
Samples: 3

Max nTPM: 52.2
Min nTPM: 37.0
Sample B Female 43.3
Sample C Male 52.2
Sample D Male 37.0
Superior colliculi
nTPM: 68.0
Samples: 4

Max nTPM: 87.8
Min nTPM: 43.2
Sample A Female 76.5
Sample B Female 43.2
Sample C Male 87.8
Sample D Male 64.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 162.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 162.8
Samples: 4

Max nTPM: 167.8
Min nTPM: 159.8
Sample A Male 159.8
Sample B Male 163.6
Sample C Female 167.8
Sample D Female 159.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
69734893 Antisense, RP_050503_01_E12, Mouse strain C57BL/6J (56 days, male) 15.9

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