HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:78.1 nTPM
HPA Brain:64.0 nTPM
GTEx:78.1 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:65.2 nTPM
Mouse:132.2 nTPM
Allen mouse:15.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055969Antibody HPA062366
Glial cells Not detectedLow
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.0
Sample id Sample description nTPM
Hippocampus
nTPM: 57.2
1898 Male, age 80, left hemisphere 66.2
2529 Female, age 94, left hemisphere 64.2
2621 Female, age 67, right hemisphere 64.2
2148 Female, age 91, left hemisphere 54.7
1855 Male, age 76, left hemisphere 51.2
1911 Female, age 85, right hemisphere 42.5
Dentate gyrus
nTPM: 55.5
2530 Female, age 94, left hemisphere 84.3
1927 Female, age 91, both hemispheres 56.4
2010 Male, age 76, both hemispheres 53.7
2531 Female, age 67, both hemispheres 50.2
2246 Female, age 85, both hemispheres 45.2
2528 Male, age 74, both hemispheres 43.4
Entorhinal gyrus
nTPM: 63.4
2613 Female, age 94, left hemisphere 76.7
2764 Male, age 80, right hemisphere 75.1
2686 Male, age 75, right hemisphere 65.1
1938 Female, age 85, left hemisphere 60.0
1787 Male, age 76, left hemisphere 53.8
2117 Female, age 91, right hemisphere 49.5
Hippocampus, CA1
nTPM: 56.2
2749 Male, age 80, left hemisphere 89.7
1873 Female, age 85, both hemispheres 61.3
2527 Male, age 74, both hemispheres 56.8
2045 Male, age 76, both hemispheres 38.6
2082 Female, age 91, right hemisphere 34.6
Hippocampus, CA2
nTPM: 57.6
1963 Male, age 80, left hemisphere 78.3
1892 Male, age 76, both hemispheres 63.3
2437 Female, age 94, left hemisphere 56.2
1940 Female, age 85, left hemisphere 53.7
2249 Male, age 74, both hemispheres 50.9
2113 Female, age 91, right hemisphere 43.0
Hippocampus, CA3
nTPM: 49.6
2137 Male, age 80, left hemisphere 66.3
2861 Female, age 67, both hemispheres 56.0
1867 Male, age 76, both hemispheres 48.7
2620 Female, age 94, left hemisphere 44.9
1891 Female, age 85, both hemispheres 43.3
2436 Male, age 74, both hemispheres 38.4
Parahippocampal cortex
nTPM: 59.6
2245 Female, age 91, both hemispheres 75.5
1850 Male, age 80, both hemispheres 71.3
2532 Female, age 72, left hemisphere 64.7
1990 Female, age 91, right hemisphere 64.6
2622 Female, age 67, right hemisphere 61.9
1933 Female, age 85, both hemispheres 56.3
2692 Male, age 74, both hemispheres 55.6
2250 Female, age 67, right hemisphere 52.2
2018 Male, age 76, both hemispheres 48.6
2693 Female, age 94, both hemispheres 45.6
Perirhinal gyrus
nTPM: 64.0
1847 Female, age 91, left hemisphere 71.6
1794 Male, age 80, right hemisphere 69.5
1841 Female, age 85, right hemisphere 64.0
2521 Female, age 94, right hemisphere 58.7
2848 Male, age 76, right hemisphere 56.4
Subiculum
nTPM: 50.8
1901 Male, age 80, both hemispheres 57.7
2438 Female, age 94, left hemisphere 56.7
1977 Female, age 85, both hemispheres 55.5
2619 Male, age 74, both hemispheres 51.9
2042 Male, age 76, both hemispheres 44.9
2729 Female, age 91, right hemisphere 38.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 78.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 78.1
Samples: 197

Max nTPM: 173.1
Min nTPM: 29.6
Std nTPM: 22.6
Median nTPM: 76.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 173.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 166.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 145.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 131.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 127.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 125.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 122.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 120.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 118.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 117.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 115.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 63.8
FF:10153-102I9 76 years, female 65.3
FF:10169-103B7 60 years, female 62.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 65.2
Pig sample Sample description nTPM
Subiculum
nTPM: 49.0
Samples: 4

Max nTPM: 64.6
Min nTPM: 42.7
Sample A Female 64.6
Sample B Female 42.7
Sample C Male 42.8
Sample D Male 45.7
Dorsal hippocampus
nTPM: 65.2
Samples: 4

Max nTPM: 91.0
Min nTPM: 47.5
Sample A Female 91.0
Sample B Female 67.4
Sample C Male 54.9
Sample D Male 47.5
Entorhinal cortex
nTPM: 64.7
Samples: 4

Max nTPM: 77.1
Min nTPM: 55.3
Sample A Female 64.4
Sample B Female 77.1
Sample C Male 61.9
Sample D Male 55.3
Ventral hippocampus
nTPM: 60.3
Samples: 4

Max nTPM: 74.0
Min nTPM: 38.1
Sample A Female 74.0
Sample B Female 38.1
Sample C Male 65.5
Sample D Male 63.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 132.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 132.2
Samples: 4

Max nTPM: 140.1
Min nTPM: 124.3
Sample A Male 131.2
Sample B Male 133.1
Sample C Female 124.3
Sample D Female 140.1
Hippocampal formation
nTPM: 111.9
Samples: 4

Max nTPM: 119.6
Min nTPM: 105.8
Sample A Male 119.6
Sample B Male 105.8
Sample C Female 116.3
Sample D Female 105.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.7
69734893 Antisense, RP_050503_01_E12, Mouse strain C57BL/6J (56 days, male) 15.7

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