MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.0 nTPM
HPA Brain:13.7 nTPM
GTEx:44.0 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Pig:4.7 nTPM
Mouse:7.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.2
2666 Male, age 74, left hemisphere 14.2
2019 Male, age 18, unknown 13.7
2219 Male, age 76, both hemispheres 12.2
1870 Female, age 42, unknown 12.1
2828 Female, age 72, unknown 11.0
2411 Female, age 72, unknown 10.1
1833 Male, age 53, unknown 8.5
1830 Male, age 51, unknown 8.3
1827 Male, age 72, unknown 7.9
2586 Male, age 75, left hemisphere 4.3
Dorsal raphe nucleus
nTPM: 9.0
1828 Male, age 53, unknown 10.5
2750 Male, age 76, both hemispheres 9.7
2016 Female, age 72, unknown 9.3
2047 Male, age 72, unknown 9.1
2298 Female, age 72, unknown 6.3
Inferior colliculus
nTPM: 10.0
1890 Male, age 53, unknown 13.2
2097 Female, age 72, unknown 11.8
1848 Female, age 42, unknown 9.0
2849 Male, age 72, unknown 6.0
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Periaquaductal grey, anterior
nTPM: 7.8
1947 Male, age 18, unknown 9.5
2502 Female, age 75, unknown 8.0
1795 Male, age 51, unknown 5.9
Periaquaductal grey, dorsal
nTPM: 7.2
2464 Female, age 72, unknown 9.1
2850 Male, age 76, both hemispheres 7.4
1840 Male, age 53, unknown 6.3
1831 Male, age 72, unknown 6.2
Periaquaductal grey, lateral
nTPM: 6.7
2053 Male, age 18, unknown 7.0
2140 Male, age 76, both hemispheres 6.7
2272 Male, age 74, both hemispheres 6.6
Pretectal area
nTPM: 9.2
2007 Male, age 72, unknown 13.8
1817 Female, age 42, unknown 12.5
2667 Female, age 75, unknown 11.7
1816 Male, age 51, unknown 11.0
2316 Male, age 76, right hemisphere 10.9
1815 Male, age 53, unknown 9.7
1944 Female, age 72, unknown 9.4
2825 Male, age 18, unknown 7.1
2224 Female, age 72, unknown 6.8
2273 Male, age 74, both hemispheres 5.4
2407 Male, age 75, both hemispheres 2.2
Red nucleus
nTPM: 13.7
1954 Female, age 42, unknown 19.3
2227 Male, age 72, unknown 17.6
2588 Male, age 74, left hemisphere 16.9
2769 Male, age 72, unknown 15.1
2823 Male, age 76, right hemisphere 15.1
1821 Female, age 72, unknown 14.9
1904 Male, age 53, unknown 14.7
2503 Female, age 72, unknown 13.7
1865 Male, age 51, unknown 13.2
2785 Male, age 18, unknown 11.3
2725 Female, age 75, unknown 7.9
2584 Male, age 75, left hemisphere 4.5
Substantia nigra
nTPM: 10.4
2409 Female, age 72, unknown 20.3
2665 Male, age 74, both hemispheres 17.3
1851 Male, age 51, unknown 11.0
1916 Female, age 42, unknown 10.5
1889 Female, age 72, unknown 10.2
2241 Male, age 72, unknown 10.2
2699 Male, age 18, unknown 7.1
1941 Male, age 53, unknown 6.7
2590 Female, age 75, unknown 5.8
2583 Male, age 75, right hemisphere 4.5
Superior colliculus
nTPM: 8.6
2668 Female, age 75, unknown 14.5
1895 Male, age 76, right hemisphere 13.9
2087 Female, age 72, unknown 10.7
2587 Male, age 74, left hemisphere 10.7
2261 Male, age 18, unknown 8.0
1839 Male, age 51, unknown 7.8
1796 Male, age 53, unknown 6.1
1995 Male, age 72, unknown 6.1
1913 Female, age 42, unknown 5.8
2664 Male, age 75, both hemispheres 2.8
Ventral tegmental area
nTPM: 8.6
2021 Male, age 53, unknown 9.5
1915 Female, age 42, unknown 9.1
2410 Female, age 72, unknown 8.6
1942 Male, age 51, unknown 8.5
2218 Male, age 76, both hemispheres 8.5
2223 Female, age 72, unknown 7.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.0
Samples: 139

Max nTPM: 136.7
Min nTPM: 6.5
Std nTPM: 28.0
Median nTPM: 35.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 136.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 129.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 121.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 119.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 118.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 113.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 112.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 112.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 112.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 97.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 96.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.7
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.9
Sample A Female 4.8
Sample B Female 5.9
Sample C Male 3.9
Sample D Male 4.0
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.8
Sample A Female 3.5
Sample B Female 4.0
Sample C Male 4.5
Sample D Male 2.8
Periaqueductal gray
nTPM: 2.8
Samples: 3

Max nTPM: 3.7
Min nTPM: 1.7
Sample B Female 3.7
Sample C Male 3.0
Sample D Male 1.7
Superior colliculi
nTPM: 4.6
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.8
Sample A Female 5.0
Sample B Female 3.8
Sample C Male 4.2
Sample D Male 5.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.5
Sample A Male 7.7
Sample B Male 7.5
Sample C Female 8.1
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71616335 Antisense, RP_050927_02_F10, Mouse strain C57BL/6J (56 days, male) 0.7

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